Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03082 ATGGCGAACCCTCAGAATCAAAAGCCATGGAAAGCTGAGTACGCGAAGTCGGGTCGATCATCATGCAGGACATGCAAGATCACCATTGAAAGCGAGAAGCTCCGTCTTGGAAAGATGGTTCAATCCACCAAATTCGATGGCCTCATGCCTATGTGGCATCATGCTGATTGCATATTGATGAAAGCCAACCAGATAAAATCAATTGATGATGTTGAAAACTTAGAGTTGCTTCGTTGGGAAGATCAGCAGAAGATCAGAAAATACATAGAGAGTGGAAGCACACAAACATCGAATGTTGTCAAAGATACTGAATGCGGTATTGAAGTTTCGAAAACTTCTCGGGCTACTTGCAAGCATTGTGGTCAAAAAATTATCAAAGGAGAGGTTCGAATATCTACTAAGCCTGATGGTCAAGGTGCTAGGGGTTTGGCTTGGCACCATGCCAAGTGTCTCATGGAACTATCACCATCACTTCAAGTGGTTAAGTTGTCTGGATGGAGTAGTCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTGGCTAAGAAAGGTCGTCCTATGAATAAGGGAGATGGTAGTGGTACAAAGGTCAAGGCTGAAGAGGTTAAAGAATCCACACAACAATCCACTTCCAAAGGTGGCACAAAACGGGGGAAGGATGCTGATGGTGAGCAGAAGTCAAAAGTTGCTAAGGCCAAAGGAGATATGTCAGCGGGCAGGGCAGCGTCAATGAAAACCCCTGATGACTCGGGGGAAGCATGTGATCTGGAGAATAGAATGGAGGCCCAGAGCAAAGAACTCTGGGCTCTGAAGGATGATCTTAAGAAGCATGTGACAACAGCAGAGTTGCGTGAAATGCTGGAAGCCAATGGTCAAGATTCAACAGGATCAGAACTTGATTTGCGTGACCGCTGTGCTGATGGAATGATGTTTGGAGGACTTGGTCATTGCCCACTATGTTCTGGTTTTCTGCGTTATTCTGGAGGAATGTACCAGTGCAGTGGATACATTTCTGAGTGGAGTAAATGTTCCTACTCTACCGGTGAACCGAAACGTGCTGAAGGGAGATGGAAAATCCCAGAGGAAACAAATAATCAGTACCTGAAAAAGTGGTTCAAATCTCAAAAGGGGAAGAAACCAGTTAGGATATTGCCTTTGTCATCATCGAGGAATTCTGTTGAAAGGCAAATTACTGCATGCCAACATCAATCGTCAAATAGGGAAAGTTTGGGAGATCTGAAAGTTGCTATCTTTGGATTACCTAAAGAGTCTATTGTAGAATGGAAACGCAAAATTGATGGCATAGGTGGGGTGCTTCATCCTAAAGTGAAGAAAGATACTAACTGTTTGGTGGTCAGTGGAGCACTCAATGATGAAACTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCACAGAGGATTATTTGGTTGACTGTTTAGAAAGAAAGAAGAAGCTTCCATTTGATATGTACAAAGTTGAAATGATAGGTGAGGCTTCTAGCATGGTCACCGTTAAAGTTAAGGGGCACAGTGCAGTTCACGAGGCTTCTGGCCTACAGGACTCCGGCCACATACTCGAGGAAGGGAAAAGCATATATAATACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATTCTCCAAATAATCCAAGAAGATAAGGGCTCAGGTTGCTATGTGTTCCGTAAATGGGGTCGAGTGGGAAATGACAAGATTGGAGGAATAAAATTGGATGAAATGCCGAAACCTGATGCAATCAGAGAATTCAAACGATTATTCTTTGAGAAAACTGGAAACCCTTGGGAGGCTTGGGAACAAAAGACTATTCAGAAGCAACCTGGAAGATTCTTCCCATTGGAAATTGATTATGGAGTAAACAAACAGGTCTCGAAAAAAAATAAAAACAATGCAGACAGCAAACTACCCCCTCCATTGATAGAATTGATGAAGATGCTCTTCAATGTAGAAACATACAGAGCCGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGTAATATCCAAAAGGGGTTTGAAGCATTAACAGATATACAGAATCTGTTAAAAACTAGCAATCCTGATCCATCAGTCAGGGAGAGCTTGCTTGTTGATGCCAGCAATCGGTTCTTCACTGTGATCCCTTCTATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCAAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTCGATGCCAATAGTGATGACTCTATTGATGATAATTACAAGAAGCTCCACTGCGATATATCTCCACTGCCTCATGACAGTGAAGATTTTTGTTTAATTGAGAAGTTTCTCCATACTACTCATGCTCCCACACATATGGATTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGAGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGTAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACCAATTTTGTTGGAATTATTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCTGCGACTGGCTATATGTTTGGCAAGGGGATTTACTTTGCTGACCTGGTCAGCAAGAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCCCTTGGAAATGTCTATGAACGCAAAAAAGCTAAGTATATGGATAAACCTCCTGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAGGAATCAGAATATGTAAAGTGGAGGGGTGATGTCATTGTTCCTTGTGGCAAACCAGTGTCATCAAATGTCAAGGCTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGACGCAATTCTTGTTGAAGGTGAGGTTCCATCACAAGAAATGA 2988 0.419 MANPQNQKPWKAEYAKSGRSSCRTCKITIESEKLRLGKMVQSTKFDGLMPMWHHADCILMKANQIKSIDDVENLELLRWEDQQKIRKYIESGSTQTSNVVKDTECGIEVSKTSRATCKHCGQKIIKGEVRISTKPDGQGARGLAWHHAKCLMELSPSLQVVKLSGWSSLSSSDQSAVSDLAKKGRPMNKGDGSGTKVKAEEVKESTQQSTSKGGTKRGKDADGEQKSKVAKAKGDMSAGRAASMKTPDDSGEACDLENRMEAQSKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDRCADGMMFGGLGHCPLCSGFLRYSGGMYQCSGYISEWSKCSYSTGEPKRAEGRWKIPEETNNQYLKKWFKSQKGKKPVRILPLSSSRNSVERQITACQHQSSNRESLGDLKVAIFGLPKESIVEWKRKIDGIGGVLHPKVKKDTNCLVVSGALNDETEMRKARRMKIPIVTEDYLVDCLERKKKLPFDMYKVEMIGEASSMVTVKVKGHSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSGCYVFRKWGRVGNDKIGGIKLDEMPKPDAIREFKRLFFEKTGNPWEAWEQKTIQKQPGRFFPLEIDYGVNKQVSKKNKNNADSKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLLKTSNPDPSVRESLLVDASNRFFTVIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANSDDSIDDNYKKLHCDISPLPHDSEDFCLIEKFLHTTHAPTHMDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGIISQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTDKKNPVGLMLLSEVALGNVYERKKAKYMDKPPEGKHSTKGLGKKMPQESEYVKWRGDVIVPCGKPVSSNVKASELMYNEYIVYNTAQVKTQFLLKVRFHHKK* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03082 995 Pfam Poly(ADP-ribose) polymerase, regulatory domain 646 776 IPR004102 GO:0003950
Rops8g03082 995 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 646 780 IPR036616 GO:0003950
Rops8g03082 995 SUPERFAMILY WGR domain-like 503 628 IPR036930 -
Rops8g03082 995 ProSiteProfiles PARP catalytic domain profile. 770 995 IPR012317 GO:0003950
Rops8g03082 995 MobiDBLite consensus disorder prediction 169 252 - -
Rops8g03082 995 Gene3D - 2 100 IPR036957 GO:0003677|GO:0008270
Rops8g03082 995 Gene3D - 101 205 IPR036957 GO:0003677|GO:0008270
Rops8g03082 995 Pfam PADR1 (NUC008) domain 303 352 IPR012982 GO:0008270
Rops8g03082 995 FunFam Poly [ADP-ribose] polymerase 403 504 - -
Rops8g03082 995 FunFam Poly [ADP-ribose] polymerase 102 212 - -
Rops8g03082 995 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 103 - -
Rops8g03082 995 Gene3D - 635 779 IPR036616 GO:0003950
Rops8g03082 995 CDD parp_like 646 990 - -
Rops8g03082 995 ProSiteProfiles WGR domain profile. 524 623 IPR008893 -
Rops8g03082 995 SMART WGR_cls 535 618 IPR008893 -
Rops8g03082 995 FunFam Poly [ADP-ribose] polymerase 638 779 - -
Rops8g03082 995 Gene3D - 313 373 IPR038650 -
Rops8g03082 995 Pfam WGR domain 535 613 IPR008893 -
Rops8g03082 995 SUPERFAMILY BRCT domain 408 495 IPR036420 -
Rops8g03082 995 Gene3D - 240 312 - -
Rops8g03082 995 FunFam Poly [ADP-ribose] polymerase 240 312 - -
Rops8g03082 995 SMART zf_PARP_3 108 182 IPR001510 GO:0003677|GO:0008270
Rops8g03082 995 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Rops8g03082 995 PANTHER DNA LIGASE 104 993 - -
Rops8g03082 995 PIRSF NAD_ADPRT 3 995 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Rops8g03082 995 FunFam Poly [ADP-ribose] polymerase 4 101 - -
Rops8g03082 995 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 108 179 IPR001510 GO:0003677|GO:0008270
Rops8g03082 995 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Rops8g03082 995 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 10 93 IPR001510 GO:0003677|GO:0008270
Rops8g03082 995 ProSiteProfiles PARP alpha-helical domain profile. 645 763 IPR004102 GO:0003950
Rops8g03082 995 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 247 386 IPR047572 GO:0008270
Rops8g03082 995 Gene3D BRCT domain 401 503 IPR036420 -
Rops8g03082 995 FunFam Poly [ADP-ribose] polymerase 313 374 - -
Rops8g03082 995 Pfam Poly(ADP-ribose) polymerase catalytic domain 790 991 IPR012317 GO:0003950
Rops8g03082 995 MobiDBLite consensus disorder prediction 215 233 - -
Rops8g03082 995 Gene3D - 780 995 - -
Rops8g03082 995 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 106 191 - -
Rops8g03082 995 CDD WGR_PARP1_like 525 630 - -
Rops8g03082 995 SMART PADR1_2 301 354 IPR012982 GO:0008270
Rops8g03082 995 ProSiteProfiles SAP motif profile. 275 309 IPR003034 -
Rops8g03082 995 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 105 185 IPR001510 GO:0003677|GO:0008270
Rops8g03082 995 ProSiteProfiles BRCT domain profile. 405 495 IPR001357 -
Rops8g03082 995 SMART BRCT_7 408 485 IPR001357 -
Rops8g03082 995 FunFam Poly [ADP-ribose] polymerase 780 995 - -
Rops8g03082 995 Pfam BRCA1 C Terminus (BRCT) domain 415 482 IPR001357 -
Rops8g03082 995 SUPERFAMILY ADP-ribosylation 779 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03082 Rops-Chr8 68527210 68541044 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03082 K24070 - gmx:100815900 1702.95