Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03027 ATGCTGGCAATAAGAAAGCTCGAAACAAGACCAGATCTCCCTTTTGTTTTATGCTTCATGGTTGCTAATTACAGTTATGGCACAACCCATGTTTCCAATAACAGAAGTCTCCACTCTACTGTTAACTCTGTTAGCTCTTGTTTAGCCAAATCAAGTTCACAAGCACTTCTACTGGGATTTGAGAATAAGTTCACCCTTCAAAGACTACATGTCTCAAGCATGGCAGAAACAATCCTTGTCCAGGCTCAAGATCCAGCCAAAGTTAGTATGGAAATACAAAATGCTATTGATGGGAATCAATTAGATTATTCATGGAAGTTATTTGAGCAGCATATGCACATGGTGGGATTTCCCAGAAAACCTGTGTTCAACAAGCTTGTAACATGTTATGTGGAAAGCCTTGATATGCAGTGGCTACAAAAAGCTTATGAATTGGTACAACGTGCTATTGAGGAAGGTAAACAAGACTTGTTAGAGAAGGAGGTGCTTATCTACCTTAGCTTTGGCCTTGCAAAAGCCGGACTACCAGTTCTGGCTTCAACCATTTTAAGAAAGATGATAGATATGGAGCATTTTCCCCCTGTCACTGCTTGGTCTGCAGTTTTAGCACACATGTCACAAACAGCAGATGGAAGTTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTATTCCAAAACAACAGGGTGGATCCACGTAAAAAGAGCAATGCACCTTTGATAGCCATGAAGCCAAATACTGCTGCTTTTAACATTGTGTTGGCAGGGTGTCTCTTATTTGAGAAATCTAGGAAGGCAGAGCAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCTGATGCAAATTTACTGATAACAATGGCACGTGTATATGAGAGAAATGGGCGAAGAGAAGAGCTTCAGAAGCTGCAAAGGCACATAGAGGAAGCTCCAAATCTAACTGATTTACAGTTCCGTCAGTGCTATAATTGTTTGCTCACATGCCATTTGAAATTTGGGGATCTAGATTCTGCATCTAACATGGTTTTAGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCCAAATTTATGACTGATGCAGCTAAAATTAATGATAACTATTCTATTGGACCAGCTTCTGTGCATAGTTTGAGCAACAGTAAAGATTTAGATAGTTTAATAAATCACCAGCCAATAAGAAATGCCGTCTTATCTTACGAGGAGTTCTCTAAAGATCGAAACTTCTTAAAACTTGAAGCAGAGTCAAATGCTGTTCTTGACTCTTTATTAGCTAAGTTGCAGATGCAGGTTGATTTGATTACAACCAAACATGGTATACTGCAACCAACTGAAACAATTTATGTGAAATTAGTTAAAGCTTTTCTAGAGGCTGACAAGACCAAGGATTTGGCAATGTTTCTTCTCAAGGCTGAAAGAGAAGACTCCCCATTTTCCAATGACAATTCAGCTTTGGTCCATGTTATTAATTCATGCATTTCACTTGGATGGTTGGATCAAGCACATGATCTCCTTGATGAGATGCGTCTAGCTGGAGTTAGAACTGGTTCATCTGTATATGCTTCTCTTCTGAAAGCATATTGTCAAGCAAATAGGGCAGCAGATGTCGCATCACTTTTGAGGGATGCTAGGAAGGCTGGTATCCAGTTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGGGTGCTACAGCAAGACACACAGGGAGCACTCAAACTATTTCAAGAGATGAAAGAGGCTAAGATTCCAAAAGCTAGTAAACAAGACCCTGGCATGCTGGCTAAAAGTGGTGCGGAGACTAATGAAGCTGCGTTGATGACAAAGTTGGTGCAGGAAATCAAGGAAGGACAAAGAATGGATTATGGAGTTCATGACTGGAATAACGTAATCCACTTTTTTTGTAAGAAGAGACTAATGCAAGATGCAGAAAAGGCTTTGAAGAAGATGAGAAGCTTAGGCCACTCACCCAATGCACAAACTTTCCATTCTATGGTCACTGGCTATGCTGCCATTGGAGGGAAATATCTGGAGGTAACAGAGCTGTGGGGTGAGATGAAAGCTCTTGCTTCTTCATCATCCTCCATGAAGTTTGATCAGGAACTTCTAGATTCTGTGCTGTATACATTTGTGAGGGGTGGATTCTTCGTTCGAGCCAATGAAGTTGTGGCAATGATGGAAAAAGGAAAGATGTTCGTTGACAAGTACAAGTACCGAATGCTGTTCTTGAAATATCATAAAACACTTTACAAAGGCAAGGCCCCGAAATTTCAGACAGAATCCCAACTAAACAAAAGGGAAGCAGCACTGGCTTTCAAAAGGTGGATAGGCTTGACTTGA 2358 0.4059 MLAIRKLETRPDLPFVLCFMVANYSYGTTHVSNNRSLHSTVNSVSSCLAKSSSQALLLGFENKFTLQRLHVSSMAETILVQAQDPAKVSMEIQNAIDGNQLDYSWKLFEQHMHMVGFPRKPVFNKLVTCYVESLDMQWLQKAYELVQRAIEEGKQDLLEKEVLIYLSFGLAKAGLPVLASTILRKMIDMEHFPPVTAWSAVLAHMSQTADGSYLAAELILEIGYLFQNNRVDPRKKSNAPLIAMKPNTAAFNIVLAGCLLFEKSRKAEQLLDMMPRIGVKADANLLITMARVYERNGRREELQKLQRHIEEAPNLTDLQFRQCYNCLLTCHLKFGDLDSASNMVLEMLRKAKEARNSLAAAKFMTDAAKINDNYSIGPASVHSLSNSKDLDSLINHQPIRNAVLSYEEFSKDRNFLKLEAESNAVLDSLLAKLQMQVDLITTKHGILQPTETIYVKLVKAFLEADKTKDLAMFLLKAEREDSPFSNDNSALVHVINSCISLGWLDQAHDLLDEMRLAGVRTGSSVYASLLKAYCQANRAADVASLLRDARKAGIQFDSSSYEAMIQSRVLQQDTQGALKLFQEMKEAKIPKASKQDPGMLAKSGAETNEAALMTKLVQEIKEGQRMDYGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHSPNAQTFHSMVTGYAAIGGKYLEVTELWGEMKALASSSSSMKFDQELLDSVLYTFVRGGFFVRANEVVAMMEKGKMFVDKYKYRMLFLKYHKTLYKGKAPKFQTESQLNKREAALAFKRWIGLT* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03027 785 Pfam PPR repeat family 631 676 IPR002885 -
Rops8g03027 785 Gene3D Tetratricopeptide repeat domain 443 595 IPR011990 GO:0005515
Rops8g03027 785 Gene3D Tetratricopeptide repeat domain 86 388 IPR011990 GO:0005515
Rops8g03027 785 Gene3D Tetratricopeptide repeat domain 598 781 IPR011990 GO:0005515
Rops8g03027 785 PANTHER BNAC05G43320D PROTEIN 30 784 - -
Rops8g03027 785 Pfam PPR repeat 323 350 IPR002885 -
Rops8g03027 785 Pfam PPR repeat 250 279 IPR002885 -
Rops8g03027 785 Pfam PPR repeat 494 519 IPR002885 -
Rops8g03027 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Rops8g03027 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Rops8g03027 785 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Rops8g03027 785 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03027 Rops-Chr8 67322746 67326017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03027 525 747 Miscellaneous Gene Families AT4G11690 20.796 1.33e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03027 - - gmx:102661989 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03027 8 67322746 67326017 Rops8g03027 8 67322746 67326017 ECH