Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03025 ATGGAACACCTCAGTGCTTTTCAAATAACAGTGAAATTAGCAGTAGCAGCCCTTATAGCCACTTCAGTGAATTTGGTTAATGGGCAGATTAGTACAACATGCACAACCTCTATGATGAGCAGTTTCACCCCATGTGCCAATATCATTACAGGAAGCACCAATAATGGTTTTTTGCCACCAACTTCATGTTGTGATTCGTTAAGGTCTTTGATGAGCACTAATATGGATTGTGCTTGCCAAGCAATATCAGCCACTGCTCCATTTTTCCAACAATCCATTAACCAAGGTCTTACCCTCTTCCTTTCACAAGCGTGCAATATTAAGGGAGTTCCTGCGCGGTGCAAAGCTTCTGGTTCTCCTTTCCCTTCTTCGGGCCCAGCAGTTCTTGGACCAGATAGCTCAACTCTCCCTCCAAGTGCTGCATCTCCCTTAAGCCCACAAGTTTCAAAAACCATGGTTGTGGCTCAAGCACACAAATATGAGAATCTTCAATTGGCAGAGGCACTGGCACCAGCATCACCACCAGTGGAAGCAGAAGCCCCCACTAAAACTCCAAGAATCCGACCAGTTTTAACTCCAAGTTCTTCGGCATCTCATCCATCTTTTGTTTCCTTGTCACCTTTTACATTCATACTCGTAGGAGTCATGGTTTTTGGTATCTATTAA 666 0.4414 MEHLSAFQITVKLAVAALIATSVNLVNGQISTTCTTSMMSSFTPCANIITGSTNNGFLPPTSCCDSLRSLMSTNMDCACQAISATAPFFQQSINQGLTLFLSQACNIKGVPARCKASGSPFPSSGPAVLGPDSSTLPPSAASPLSPQVSKTMVVAQAHKYENLQLAEALAPASPPVEAEAPTKTPRIRPVLTPSSSASHPSFVSLSPFTFILVGVMVFGIY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03025 221 Gene3D - 31 120 IPR036312 -
Rops8g03025 221 CDD AAI_LTSS 42 107 - -
Rops8g03025 221 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 16 152 IPR043325 -
Rops8g03025 221 Pfam Probable lipid transfer 18 114 IPR016140 -
Rops8g03025 221 SMART aai_6 34 114 IPR016140 -
Rops8g03025 221 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 37 112 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03025 Rops-Chr8 67319608 67321227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03025 29 125 Lipid Metabolism Gene Families AT2G48140 49.485 3.59e-26 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03025 - - gmx:100786841 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03025 8 67319608 67321227 Rops8g03025 8 67319608 67321227 ECH