Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03023 ATGGCTGGTTGTAAAGAAGAGTCTTTTAATTCAGCGTGCCGTTTCATCGCATCTCAGCACCTAATTCCTTCCTTCCTTACCCTCTCTTCTTCCCTTCTTCCCTCTCTTCTCTTCGATTCTTTATCTTCTTCGCTCCCAGGTGCACCTTCCATAATAGCAGGAAGACTTCCTGACGCTGTTGCAATCAGGTGCCTTGCACGGGTTCCCTTTTACCTCCATCCGAAGTTAGAGCTTGTCTCTCGTTCTTGGCAAGCAGCCATTCGTAGCCCTGAACTATTCAAAGCTCGGCAGGAGGTTGGTTCATCGGAGGATCTGTTATGTGTCTGTGCTTTTGATCCAGAGAACTTGTGGCAGCTGTATGACCCTTTAAGAGATCTCTGGATTACACTTCCTGTTCTTCCCTCAAAGATCAAGCACCTTTCCCACTTTGGTGCTGTTTCCACTGCTGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCCTTAACTGGTGATCAAGATGGTTGTTTTGCAACTGATGAAGTCTGGTCATATGACCCTGTAGTCCGGCAGTGGGCCCAGAGAGCTTCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGTGTTTTGAATGGGAAAATTATCGTGGCAGGGGGCTTCACTAGCTGCAGAAAATCAATATCTCAAGCAGAAATGTATGACCCTGAGAAGGATGTTTGGATTCCAATGCCTGATCTTCATCGCACTCATAATTCAGCCTGTTCAGGAGTAGTGATTGGTGGAAAGGTGCATGTACTACACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGCCTGGGTGGACGGTTGAGGAATGTGCATGGCTCCAAGGTCCAATGGCAGTTGCCCAGGATGCACTTTATGTGATGAGCCATGGATTTATCATCAAGCAGGACAAAGAAGAAGTGAGAAAGGTTGTAGGTTCAGCATATGAGTTTAGAAGGAGAATTGGGTTTGCAATGATTGGGCTAGGTGATGAGTTATACGTGATTGGAGGCTTCATTGGCCCTGATAGATGGAATTGGGACATTAAGCCATTATCTGATGTTGATGTTCTCACACTTGGGAGTGAGAGACCAACCTGGCGCCAGGCAGCTCCAATGACACGGTGTCGTGGTACCATTCTTGGTTATACACTGCTGAGAATTTAG 1185 0.465 MAGCKEESFNSACRFIASQHLIPSFLTLSSSLLPSLLFDSLSSSLPGAPSIIAGRLPDAVAIRCLARVPFYLHPKLELVSRSWQAAIRSPELFKARQEVGSSEDLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIKHLSHFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEVWSYDPVVRQWAQRASMLVPRSMFACCVLNGKIIVAGGFTSCRKSISQAEMYDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGPGWTVEECAWLQGPMAVAQDALYVMSHGFIIKQDKEEVRKVVGSAYEFRRRIGFAMIGLGDELYVIGGFIGPDRWNWDIKPLSDVDVLTLGSERPTWRQAAPMTRCRGTILGYTLLRI* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03023 394 Pfam Kelch motif 197 242 IPR006652 GO:0005515
Rops8g03023 394 Pfam Kelch motif 326 379 IPR006652 GO:0005515
Rops8g03023 394 Pfam Kelch motif 140 194 IPR006652 GO:0005515
Rops8g03023 394 SMART kelc_smart 209 256 IPR006652 GO:0005515
Rops8g03023 394 SMART kelc_smart 338 393 IPR006652 GO:0005515
Rops8g03023 394 SMART kelc_smart 151 208 IPR006652 GO:0005515
Rops8g03023 394 Gene3D - 107 390 IPR015915 GO:0005515
Rops8g03023 394 PANTHER OS02G0202900 PROTEIN 53 343 IPR045887 -
Rops8g03023 394 SMART fbox_2 56 96 IPR001810 GO:0005515
Rops8g03023 394 SUPERFAMILY Kelch motif 109 383 IPR015915 GO:0005515
Rops8g03023 394 CDD F-box_AtAFR-like 51 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03023 Rops-Chr8 67309037 67314606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03023 56 236 Miscellaneous Gene Families AT4G33900 29.474 1.06e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03023 - - gmx:100800954 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03023 8 67309037 67314606 Rops8g03023 8 67309037 67314606 ECH