LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03022	ATGGAGGAAGAAAGAGAAGCGGAATCGAAGAAAGACGTTGAAGTGGCTCCGGCACTCATCGCGGTTCACCCGGACGAACACTCCGTCGCCGTAGCGGTCGGACAGGAACTCCGCGTGTTCGACATCGTTGGTGGTTGTGCAGCTTCTTTACTCGATGACTCTGTCTCCGGTGGCGAACCATTTCATAAGGACAATATCAGAGCCATTCGGTTTGGTGCGAAAGGAAAACTCTTCGTATCTGCCGGTGATGATAAAACCGTTAAGATATGGTCACCCCAATCTTGGCGCTGCATCTCCACAGTGTGCTCAGAAAAGAGAGTCACTGCAGTTGCCATAAGCAATGATGGATCTTATGTCTGTTTTGCTGATAAATTCGGCCTTGTTTGGGTTGTTGATCTCAATCAATCATTAGCTGATAACAAACCAACACCTCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCACCAGATGGTCGGTTTATTTTAAGTGCCGATCGGGATTTTAAGATTCGTGTTACTAGTTTTCCCAATAATCCCTTAAATGGAGCTCATGAGATACAAAGTTTCTGTCTTGGTCATACAGAGTTTGTCTCCTGCCTTTCCTTCATTCATGCTCAGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGTGGCGATTCTACTGTCCGATTGTGGGATATTTCCTCTGGAGCACTCCTAGATACTTGTGAGGTTGCAATTAAGGCAGGACTTTTAGAATCTAATGGTAAAGCAGAGGAGCATGGCCATGCTATTACTGATTTATGCACTACCATGGATGGTTTGCTTGTTGCAGTGGCCATTCAGAGCTTGCAAGGAATAGTATTGTTGAGTTGCAATGTTTCTGCACAAACACTTTCTGTTGCCAAGGTGGTTTCTATTGCAGGAGAGGCCTTTATCCCTACCTGCCTGGGGAGTAGCTCCTCTGCAGGGAAACTGTGGATGGTTACAGGTGTCTCTGGTTTACCTGGTTCTGATTACCCCTCTTTGGCTCGGGTCCGAGTAATTTCTGGTATTGATGCCGAGCAAGAGCAAGTTGTTCTGGGAGATGATAAGATACCTGGGGGAGAAAAGCTGCTAGAAACGTTGCAAGGAGCTGCATCTGTTGATGGAAATGCTTTTTTGGCAGCAGCTGAAGCGGTCAAAACTGCAATGTGCAACCTATTAATAAAAAAACAATACTCTGCAGAGAATAGAGAATCTAGGAAGAAAACCAGAAATGATAGAAAACTCAAGGGGTAG	1272	0.4544	MEEEREAESKKDVEVAPALIAVHPDEHSVAVAVGQELRVFDIVGGCAASLLDDSVSGGEPFHKDNIRAIRFGAKGKLFVSAGDDKTVKIWSPQSWRCISTVCSEKRVTAVAISNDGSYVCFADKFGLVWVVDLNQSLADNKPTPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTSFPNNPLNGAHEIQSFCLGHTEFVSCLSFIHAQECPQGLLLSGSGDSTVRLWDISSGALLDTCEVAIKAGLLESNGKAEEHGHAITDLCTTMDGLLVAVAIQSLQGIVLLSCNVSAQTLSVAKVVSIAGEAFIPTCLGSSSSAGKLWMVTGVSGLPGSDYPSLARVRVISGIDAEQEQVVLGDDKIPGGEKLLETLQGAASVDGNAFLAAAEAVKTAMCNLLIKKQYSAENRESRKKTRNDRKLKG*	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g03022	423	ProSitePatterns	Trp-Asp (WD) repeats signature.	217	231	IPR019775	-
	Rops8g03022	423	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	194	234	-	-
	Rops8g03022	423	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	59	91	-	-
	Rops8g03022	423	Hamap	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4].	26	415	IPR028884	GO:0036265
	Rops8g03022	423	PANTHER	WD40 REPEAT PROTEIN 4	16	415	IPR028884	GO:0036265
	Rops8g03022	423	Gene3D	-	17	103	IPR015943	GO:0005515
	Rops8g03022	423	SUPERFAMILY	WD40 repeat-like	20	276	IPR036322	GO:0005515
	Rops8g03022	423	ProSiteProfiles	Trp-Asp (WD) repeats profile.	194	239	IPR001680	GO:0005515
	Rops8g03022	423	SMART	WD40_4	94	132	IPR001680	GO:0005515
	Rops8g03022	423	SMART	WD40_4	186	230	IPR001680	GO:0005515
	Rops8g03022	423	SMART	WD40_4	53	91	IPR001680	GO:0005515
	Rops8g03022	423	SMART	WD40_4	139	178	IPR001680	GO:0005515
	Rops8g03022	423	FunFam	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit	16	104	-	-
	Rops8g03022	423	ProSiteProfiles	Trp-Asp (WD) repeats profile.	59	100	IPR001680	GO:0005515
	Rops8g03022	423	FunFam	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit	105	357	-	-
	Rops8g03022	423	Pfam	WD domain, G-beta repeat	62	91	IPR001680	GO:0005515
	Rops8g03022	423	Pfam	WD domain, G-beta repeat	147	176	IPR001680	GO:0005515
	Rops8g03022	423	Pfam	WD domain, G-beta repeat	194	230	IPR001680	GO:0005515
	Rops8g03022	423	Gene3D	-	104	305	IPR015943	GO:0005515

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g03022	62	379	Miscellaneous Gene Families	AT5G08390	22.687	7.95e-07	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03022	K15443		-	gmx:100809122	698.353

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops8g03022	8	67302071	67304838	Rops8g03022	8	67302071	67304838	ECH