LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03006	ATGTCTTCTCACTTCTCCACCCACTACCATCTTCCCTCCTTCTCTTCTTCTAAGCATTTCCCTTTTACATCATCATCATCTTCTTCTTCTATCTCTCTTCAACACTTCTCCAAATCCTCTGTGGGTGCCGTGTCGTTCGAGGCTAACGACAAACAAGAGAAAAGATGCAGAGCTATATCCAAATCACGAACTCAAGAATATACAGATGTATTTCAGGGTAGTCTAGCAACGTTAAAGTTGCGTGAGATTAATGTGGAGGATGACATAAATGAGGAGGAGCAAGATATTGGGTTTTCGGTGAATAAGATCAAGAAGCGAGTGGAGGCTATCAAATCGATATTGGGTTCCATGGAAGATGGAGAGATAACCATATCTGCTTATGACACAGCTTGGGTTGCTCTTGTAGAAGATGTTCATGGAAGTGGTACCCCCCAATTTCCTTCGAGTCTAGAATGGATAGCAAAAAATCAACTTTCTGATGGTTCATGGGGTGATAGAGAATTATTTTCAGCTCATGATCGGATTATTAACACGTTGGCTTGTGTTATTGCATTAAGATCATGGAATATGCACCCTGAAAAGTGTGATAAAGGAATGAACTTTTTTAGAGAAAACCTTGGCAAGCTTCAGAATGAGAATGCTGAGCACATGCCAATCGGTTTTGAAGTTGCTTTCCCTTCACTTCTGGATATAGCTCGTGGTTTGAACATTGAAGTACCAGATGATTCCCCTATATTGAACCATATCTTTGCAAAGAGAGATGAAAAACTCACAAGAATACCAAGAGAGATGATGCATAAAGTGCCCACAACTCTGCTCCATAGCTTGGAGGGTATGTCAGGCTTAGACTGGAAACAACTTCTAAAACTGCAGTCTCAAGATGGATCTTTCTTGTTTTCTCCATCTTCCACCGCCTTTGCTCTCATGCAAACTAAAGATGAAAATTGCCTCAGATACTTGAATAAAGCAGTCAAGAAGTTCAATGGGGGAGTTCCAAACGTGTATCCGGTGGATTTGTTTGAACATATTTGGGTGGTTGATCGGTTGGACCGCCTCGGAATATCTCGGTATTTTCAACAAGAGATCAAAGAATGCATGGATTATGTGTACAGATATTGGACTGAAAGGGGCATTTGTTGGGCAAGAAATTCAAAAGTTCAAGATATTGATGACACAGCAATGGGTTTCAGATTACTAAGATTACATGGTTACCAAGTTTCAGCCAATGTGTTTCAGCACTTTGAGAGAAATGGTGAATTCTTCTGCTTTGCTGGACAGTGCACACAAGCGGTGACAGGGATGTTTAATCTGTACAGAGCCACTCAAGTACTGTTCCCTGGGGAGAAAATTCTCGAGCATGCCAAGCACTTTTCTGCCAAGTTTTTGAGGGAGAAACAAGCAGCAAATGAGCTAATAGATAAATGGATCTTAATGAAGAACTTGCCTGAAGAGGTGGCTTATGCATTGGATTTGCCATGGTATGCGAGCTTACCTCGAGTGGAGACAAGATTCTACATTGATCAATATGGTGGTGAGAGTGACGTATGGATAGGCAAAACTCTTTATAGGATGGCCTATGTGAGCAACAATAATTACCTGGAGCTTGCTAAATTAGATTACAGCAATTGTCAAGCACTGCACCTATCAGAGTGGGGGAGAATTCAGAAGTGGTACTCAGAATCTAGACTGGGAGAGTTTGGATTAAGCAGAAGGACTCTTTTATTGGCCTATTTTTTGGCAGCAGCAAGCATATTTGAGCCTGAAAGGTCCCATGAGAGGCTTGCATGGGCCAAAACCACAGTCTTGCTTGAGACAATCACATCCTTTGTTAGTGATGCTGAAATGAGGAAAGATTTCGTTAAAAAATTCATTGATTGCAGGCTTGACTACTCCATTGGCTGGAGGTTGAACAGGAACAAAACAGGACATGGACTCGCTGAAACTTTGGTTGCAACCATAGACCAAATCTCGTGGGATGTACTTGTGTCTCATGGTCATGAAATTGGATATGATATGCATCACTGTTGGGAAAAGTGGCTTTCAAGTTGGCAAAGTGAAGGAGACAAACATGAAGGACAAGCAGAGCTTTTGGTGCAAATAATAAACCTAAGTGCAGGGCATTGGATTTCAGAGGAGCAAATGTTCAATTCACAATACCAACATCTCATTAAACTCACTAACACACTCTGCCATAAGCTTCGTTGCTATCAAAAGGACAAGGAACTTGGCCGCGGCAACCACGTAAACATCACCACCACCCCAGAAATAGAGTCAAAAATGCAAGAACTTGTGCAATTGGTGTTCAAAAAATCTGCAAATGGCATTGATTTCAATATCAAGAATACTTACTTCACAGTGGCGAGGAGTTTTTACTATACAGCTTTCTGTGATTCGAGGACCATCAACTTCCATATCGCCAAAGTTCTCTTTGATAAAGTCGTTTAA	2445	0.4131	MSSHFSTHYHLPSFSSSKHFPFTSSSSSSSISLQHFSKSSVGAVSFEANDKQEKRCRAISKSRTQEYTDVFQGSLATLKLREINVEDDINEEEQDIGFSVNKIKKRVEAIKSILGSMEDGEITISAYDTAWVALVEDVHGSGTPQFPSSLEWIAKNQLSDGSWGDRELFSAHDRIINTLACVIALRSWNMHPEKCDKGMNFFRENLGKLQNENAEHMPIGFEVAFPSLLDIARGLNIEVPDDSPILNHIFAKRDEKLTRIPREMMHKVPTTLLHSLEGMSGLDWKQLLKLQSQDGSFLFSPSSTAFALMQTKDENCLRYLNKAVKKFNGGVPNVYPVDLFEHIWVVDRLDRLGISRYFQQEIKECMDYVYRYWTERGICWARNSKVQDIDDTAMGFRLLRLHGYQVSANVFQHFERNGEFFCFAGQCTQAVTGMFNLYRATQVLFPGEKILEHAKHFSAKFLREKQAANELIDKWILMKNLPEEVAYALDLPWYASLPRVETRFYIDQYGGESDVWIGKTLYRMAYVSNNNYLELAKLDYSNCQALHLSEWGRIQKWYSESRLGEFGLSRRTLLLAYFLAAASIFEPERSHERLAWAKTTVLLETITSFVSDAEMRKDFVKKFIDCRLDYSIGWRLNRNKTGHGLAETLVATIDQISWDVLVSHGHEIGYDMHHCWEKWLSSWQSEGDKHEGQAELLVQIINLSAGHWISEEQMFNSQYQHLIKLTNTLCHKLRCYQKDKELGRGNHVNITTTPEIESKMQELVQLVFKKSANGIDFNIKNTYFTVARSFYYTAFCDSRTINFHIAKVLFDKVV*	815

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g03006	814	Pfam	Terpene synthase, N-terminal domain	283	489	IPR001906	GO:0010333\|GO:0016829
	Rops8g03006	814	SFLD	Terpene Cyclase Like 1 N-term	100	523	-	-
	Rops8g03006	814	PANTHER	ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC	101	811	-	-
	Rops8g03006	814	Gene3D	Farnesyl Diphosphate Synthase	543	814	IPR008949	-
	Rops8g03006	814	FunFam	Ent-copalyl diphosphate synthase, chloroplastic	543	814	-	-
	Rops8g03006	814	Coils	Coil	75	95	-	-
	Rops8g03006	814	Pfam	Terpene synthase family, metal binding domain	533	686	IPR005630	GO:0000287\|GO:0010333\|GO:0016829
	Rops8g03006	814	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	126	208	IPR008930	-
	Rops8g03006	814	SFLD	Terpene Cyclase Like 1 N-term - Enzymatic	100	523	-	-
	Rops8g03006	814	Gene3D	-	126	338	-	-
	Rops8g03006	814	FunFam	Ent-copalyl diphosphate synthase, chloroplastic	315	540	-	-
	Rops8g03006	814	Gene3D	-	109	540	IPR036965	GO:0010333\|GO:0016829
	Rops8g03006	814	FunFam	Ent-copalyl diphosphate synthase	126	338	-	-
	Rops8g03006	814	SUPERFAMILY	Terpenoid synthases	529	796	IPR008949	-
	Rops8g03006	814	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	294	514	IPR008930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g03006	Rops-Chr8	67020965	67030617	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03006	K04120		-	gmx:100784193	1375.15

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops8g03006	8	67020965	67030617	Rops8g03006	8	67020965	67030617	ECH