Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02976 ATGGCAAATCTCGTGCCATCATTCTCATTCTCAGTGATTCCTCAGAATCAACATAAATACGGAACCAAATGGTCCTGTTTTCCCAAATCATGCATCCAAAGGAAGCATCACCAACTTGTTAATAGAGGATTGCAACATTTTATCATACCCTTTTCCCAGAACCCCACTTCAAAATTGTGTGCCACATCTCGATTGTCTATTGAGGAAAACGAGAAACAACTCACTCCCTTTACCCAATCCAAAGACCCAAAAACGGCATTGTCTTATTTGTTTAGAACAGAAATCGGTGGCGGTTTGGTGAAAGTTTATGTTACTAAGAAAAAAGTTAGTTATTGTGTCTATATTGAGGTTTTTTCCTTGGAGTTAAGCAATGGTGAAGGGGAAACATTGGAGTTGTGTTGGGGTGTGTATAGAGCTGATTCATCGAGTGTAGATGGGATGAATGCGAGTCCCTTGTCACGAACTTCTCAGGGCAAGTTTACAATTGAATTCGAATTTGATGCTAAACAAGTTCCCATGTACTTGTCGTTTTTGTTGAGATCATCCTTTGATGCCGGGTTGGAAATCAGAAGCCATAGGAAAACCAATTTCTGTGTGCCTGTTGGTTCTCTTCCAGGGTACCCAGCTCCTCTGGGGCTCTCTTTTTCCCCTGATGGGTCTATGAATTTCGCCGTTTTCTCAAGACATGCAGAGGGTGTGGTTTTGTGCTTGTATGATGACACTGGTGTGGAGAAGCCTGCTTTGGAGCTTGATCTAGATCCTTATGTGAACAAGTCAGGTGACATATGGCATATCTCCTTTGAGAGTGCTTGGACTTTTGTGAGCTATGGTTATCGCTTCAGGAAGGATAGTAGTTATGCTGAGCATGTTGTTTTGGATCCCTATGCTAGGATTATTGGGAATTCTTATTCTAATGGTATTGGATCAGTGAAGAATCTTGGACGGTTGGGAAAGGAACCTACTTTTGACTGGGATGATGATTATCATCCGAATTTGTCCATGGAAAAACTAGTGGTGTATAGGTTGAATGTGAAGCGCTTTACGGAGCATGAGTCCAGCCAACTTCCTAGTGATTTGGCTGGGACCTTTTCTGGCTTGGCTAAAAAGCTGCAGCATCTTAAAGATCTGGGTGTGAATGCTGTTCTGTTGGAGCCGGTTTTCACATTTGATGAGGAAAAAGGACCATATTTTCCTTGTCATTTTTTTTCTCTAATGAATGCTTATGGACCATCTGGTGGTCCTGTATCTACTATCACCTCTATGAAAGAGATGGTGAAAACTATGCATGCCAATGGGATAGAAGTTCTCATGGAAGTTGTTTTCTCCAACACTGCTGAGACTGGTGCTCTGCAGGGAATTGATGACTTATCCTACTATTATGCAAATGGAGTTGGTGATTTGAAGTTACAGGGTGCTTTGAATTGTAACTATCCTATAGTACAAAATTTGATTCTGGATAGCCTTAGGTATTGGGTGACTGAGTTTCACATTGACGGCTTCTCTTTCATCAATGCTTCACATCTGTTGAGGGGGTTCCATGGAGAGTACTTGTCTCGTCCTCCATTGGTTGAAGCAATTGCTTTTGACCCAGTACTCTGGAAAACTAAAATCATTGCAGATTGCTGGGATCCCCATGACATGTTAGCAAAGGAAACTAGCTTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTTTGTAATGATGTGAGAAACTTTTTAAGGGGTGAAAATCTTCTTAGCAACCTTGCAACAAGACTTTGTGGGAGCGGGGACATGTTTTCTGATGGACGAGACCCTGCATTCTCGTTTAATTACATTACCAGGAACTTTAGACTTTCTCTCGTGGACTTAGTCAGCTTCAGTAGTGGTGATCTGATGGCAGAGTTAAGTTGGAATTGTGGAGAACAAGGACCTACAAACAACACCACTGTCCTCGAAAAACGACTCAAACAAATCCGTAATTTCCTCTTCATCTTGTTTGTGTCCTTAGGAGTACCTGTTCTGAACATGGGAGATGAGTGCGGTCAGTCTTCTGGTGGTTCTCCAGCATATGATGACATAAAACCTTTCAACTGGAGTGCTCTGAAAACAGGTTTTGGTAAACAAATCACACAATTCATCTCCTTTTTAACTTCATTGAGAAGGAGTCGGAGTGATCTTCTTCAGAGCAGGAGCTTCTTAAAAGAAGAAAATATTGAGTGGCGTGGAAGTGATGGGGCTCCACCAAGATGGGAAGATCCATCCTGCAAGTTCCTAGCTATGACTTTGAAGGCTGAAAAAATGGAGTTCCCAGAGAGCTCAGTAACTTCTGATATATCAGGGGATTTATTCATAGCTTTCAATGCAGCTAATCAACCTGAGACTGTAGTTTTACCCCTGCCTCCAGAAGGGATGTCATGGTACCGTTTAGTTGATACAGCTGTTCCATTTCCTGGGTTTTTCTCAACCAGTGGTGAATTTGTCCCTGAGCAGATACCAGGTTTGTTTACTTATGAAATGAAGTCATACAGCTGCACATTGTTTGAGGCAAACAATTGTACCAGTTAA 2553 0.4179 MANLVPSFSFSVIPQNQHKYGTKWSCFPKSCIQRKHHQLVNRGLQHFIIPFSQNPTSKLCATSRLSIEENEKQLTPFTQSKDPKTALSYLFRTEIGGGLVKVYVTKKKVSYCVYIEVFSLELSNGEGETLELCWGVYRADSSSVDGMNASPLSRTSQGKFTIEFEFDAKQVPMYLSFLLRSSFDAGLEIRSHRKTNFCVPVGSLPGYPAPLGLSFSPDGSMNFAVFSRHAEGVVLCLYDDTGVEKPALELDLDPYVNKSGDIWHISFESAWTFVSYGYRFRKDSSYAEHVVLDPYARIIGNSYSNGIGSVKNLGRLGKEPTFDWDDDYHPNLSMEKLVVYRLNVKRFTEHESSQLPSDLAGTFSGLAKKLQHLKDLGVNAVLLEPVFTFDEEKGPYFPCHFFSLMNAYGPSGGPVSTITSMKEMVKTMHANGIEVLMEVVFSNTAETGALQGIDDLSYYYANGVGDLKLQGALNCNYPIVQNLILDSLRYWVTEFHIDGFSFINASHLLRGFHGEYLSRPPLVEAIAFDPVLWKTKIIADCWDPHDMLAKETSFPHWMRWAEINTNFCNDVRNFLRGENLLSNLATRLCGSGDMFSDGRDPAFSFNYITRNFRLSLVDLVSFSSGDLMAELSWNCGEQGPTNNTTVLEKRLKQIRNFLFILFVSLGVPVLNMGDECGQSSGGSPAYDDIKPFNWSALKTGFGKQITQFISFLTSLRRSRSDLLQSRSFLKEENIEWRGSDGAPPRWEDPSCKFLAMTLKAEKMEFPESSVTSDISGDLFIAFNAANQPETVVLPLPPEGMSWYRLVDTAVPFPGFFSTSGEFVPEQIPGLFTYEMKSYSCTLFEANNCTS* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02976 850 PANTHER GLYCOGEN DEBRANCHING ENZYME 173 846 - -
Rops8g02976 850 SMART aamy 341 719 IPR006047 GO:0005975
Rops8g02976 850 Pfam Alpha amylase, catalytic domain 361 447 IPR006047 GO:0005975
Rops8g02976 850 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 210 296 IPR004193 GO:0004553|GO:0005975
Rops8g02976 850 CDD AmyAc_plant_IsoA 333 724 IPR044096 GO:0019156|GO:0019252
Rops8g02976 850 Gene3D Glycosidases 318 731 - -
Rops8g02976 850 Gene3D - 732 850 IPR013780 -
Rops8g02976 850 Gene3D Immunoglobulins 198 312 IPR013783 -
Rops8g02976 850 SUPERFAMILY Glycosyl hydrolase domain 731 845 - -
Rops8g02976 850 CDD E_set_GDE_Isoamylase_N 210 341 IPR044505 -
Rops8g02976 850 SUPERFAMILY E set domains 205 330 IPR014756 -
Rops8g02976 850 SUPERFAMILY (Trans)glycosidases 320 722 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02976 Rops-Chr8 66458234 66461209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02976 15 850 Glycoside Hydrolase AT1G03310 56.069 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02976 K01214 - gmx:100777953 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02976 8 66458234 66461209 Rops8g02976 8 66458234 66461209 ECH