Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02948 ATGAAGCGAGTGTGGAGATTCTCTTCAGACGCAGCAGCGCAATCTGAATACTTCTTCTCCCAATTCCATGGAATCTGTTTCTCTTTAATCCCCAAACCAATTCCTCCCTCAACTACAACGCATCGTTTTGGGTTCACCCGCCACCTCAATACCCTTCCAAACAAGTTCTCCGACCTCGTTGCCCTTTACACTGCAAAGCCTGTCTCTTCACCCAAAGAGGCTTTCACCAAAAAAGTTGCGATTTTGAGGAACGAATTGGTTCTAGAAGCCTCGGATTCTGATAAGGTTCTCAGCATACTGGATGAGAATTCTGACTCTTTGAATCGATCTCACCCCAGTGGATCTGTTTTGTTTGAGCTTTTGAATCAGTTGGATTCATGGCCTTCACTTGCCCTTCAGGTGTTTGATTGGAGAAGAAAGAGAAAGGGCTCTGATGGTGGCACCCCCATGACTGCATATGAGTACTCTAAGGGTATAAAATTTGCTGGTAGATCTGGGAATATTGATCTTGCTGTTAAGATATTTAAGGAGGCTGCTAGCAAAGGTCTCAAGACAACCGGCACTTACAATGCACTGATGGGTGCTTTTATGTTCAATGGTCTTGCTGATAGGTGCCAAACATTGTTTTCTGAAATGGAGAGCGATGAAACTTGTGATCCTTCTATTGCCACATTCAATATGCTTATATCTGTTTTTGGACGCATGATGCTGGTTGATAACATGGAAGCAACATTGCAGGAGATAAATAAGTTAGACCTCTCCCCTAATATACACTCTTACAATTATTTAATTGCTGGGTATATTTCAGCTTGGATGTGGGATGACATGGAAAAGGTTTTTCGGATGTTAAAGTCAAGCCTTGTCAGCCCTAACTTGAAAACCTACCTGCTAATGCTCCGCGGGTATGCACATTCTGGTAATCTGGAGAAGATGGAAGGGATATATTCATTGGTAAGGGATCATGTAAACAAAAAGGAAATTCCGCTGATCAGGTCTATGATATGTGCCTATTGTAAAAGTTCTGAAGCAGATAGAATTAAGAAAATAGAGGAATTGTTAAAGTTAATCCCGGAAGAAGAGTACAGGCCATGGTTAAATGTGTTGTTGATTAAGCTCTATGCCCAGGAAGACTGGTTAGAGGAAATGGAGAATGCAATAAATGAGGCATTTGAACACAGAACCCCTGTAACAACCACGGGTATCATGAGATGCATAATTGCAACTTATTTTCGGTGCGATGCATTAGAAAAACTAGAAAATTTTGTGATACGTGCTGAATTTGCTGGGTGGAGAATCTGCCACTCCTTATATCATTGTAAGCTGGTCATGCATGGGTCACGGAAGCACTTCAAAGAAATGCGAAATGTCCTTGAGGAGATGAATGGTGTCAACCTTACTCACAACAAGAAAACATTGTGGATAATGTACAAAGCTTACTTGAGCTCTGGTCAGAGATCCATGGTTATGAAAATATTGGGACAAATGTTCAAGCATGGTTATGAAGTTCCCCTGGATGCATTTCCGTCATGA 1530 0.4163 MKRVWRFSSDAAAQSEYFFSQFHGICFSLIPKPIPPSTTTHRFGFTRHLNTLPNKFSDLVALYTAKPVSSPKEAFTKKVAILRNELVLEASDSDKVLSILDENSDSLNRSHPSGSVLFELLNQLDSWPSLALQVFDWRRKRKGSDGGTPMTAYEYSKGIKFAGRSGNIDLAVKIFKEAASKGLKTTGTYNALMGAFMFNGLADRCQTLFSEMESDETCDPSIATFNMLISVFGRMMLVDNMEATLQEINKLDLSPNIHSYNYLIAGYISAWMWDDMEKVFRMLKSSLVSPNLKTYLLMLRGYAHSGNLEKMEGIYSLVRDHVNKKEIPLIRSMICAYCKSSEADRIKKIEELLKLIPEEEYRPWLNVLLIKLYAQEDWLEEMENAINEAFEHRTPVTTTGIMRCIIATYFRCDALEKLENFVIRAEFAGWRICHSLYHCKLVMHGSRKHFKEMRNVLEEMNGVNLTHNKKTLWIMYKAYLSSGQRSMVMKILGQMFKHGYEVPLDAFPS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02948 509 Pfam Pentatricopeptide repeat domain 173 234 IPR002885 -
Rops8g02948 509 PANTHER EXPRESSED PROTEIN 46 508 IPR044179 GO:0003729
Rops8g02948 509 Gene3D Tetratricopeptide repeat domain 76 249 IPR011990 GO:0005515
Rops8g02948 509 Gene3D Tetratricopeptide repeat domain 250 319 IPR011990 GO:0005515
Rops8g02948 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Rops8g02948 509 Pfam PPR repeat family 255 303 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02948 144 346 Miscellaneous Gene Families AT4G11690 27.230 1.98e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02948 - - gmx:100792116 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02948 8 66150842 66154447 Rops8g02948 8 66150842 66154447 ECH