Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02946 ATGAGTTCTTCAGAAGCTGGAACCAAAACCACCAAAGGTGGCAGGGGCAAACCCAAGGCTTCAAAAGCCGTGTCAAGATCCTCCAAAGCTGGCCTTCAATTCCCAGTTGGCCGCATCGCTCGCTACCTCAAAGCCGGTCGCTATGCCCAACGTGTCGGATCTGGATCCCCGGTTTATCTCTCTGCCGTTCTTGAATACCTTGCTGCTGAGCTTTTGGAACTTGCTGGGAATGCTGCGAGGGATAATAAGAAGACGAGGATTATACCCAGGCACATTCAACTTGCTGTGAGGAATGATGAGGAACTGAGCAAGCTTATGGGGTCTGTGACCATTGCTAATGGAGGGGTTCTGCCCAACATTCACCAGAATCTGTTGCCTCACAAGAACACTAGTAAGGGAAAAGGGGAAATTGGATCTGCTAGTCAGGAGTTTTAG 435 0.4989 MSSSEAGTKTTKGGRGKPKASKAVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYLSAVLEYLAAELLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIANGGVLPNIHQNLLPHKNTSKGKGEIGSASQEF* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02946 144 PANTHER HISTONE H2A 15 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Rops8g02946 144 CDD H2A 16 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Rops8g02946 144 MobiDBLite consensus disorder prediction 124 144 - -
Rops8g02946 144 Pfam C-terminus of histone H2A 100 133 IPR032454 -
Rops8g02946 144 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Rops8g02946 144 Gene3D Histone, subunit A 9 136 IPR009072 GO:0046982
Rops8g02946 144 Pfam Core histone H2A/H2B/H3/H4 11 97 IPR007125 GO:0003677
Rops8g02946 144 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Rops8g02946 144 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Rops8g02946 144 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Rops8g02946 144 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Rops8g02946 144 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Rops8g02946 144 MobiDBLite consensus disorder prediction 1 28 - -
Rops8g02946 144 FunFam Histone H2A 12 136 - -
Rops8g02946 144 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Rops8g02946 144 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02946 Rops-Chr8 66087063 66087710 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02946 K11251 - gmx:100818215 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02946 8 66087063 66087710 Rops8g02946 8 66087063 66087710 ECH