Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02856 ATGGACAAGCCACCCTTCTTCATCTTCCAAATTATCTTATTCCTTCTCATCCAATCACTTCTCGCCACGTCACACCCACCAAACCCCATCCCCGTTACGGTTTACGTCGCCGACTTCGGAGCCGCCGGCGACGGCGTCCGTTACGACACTGTGGCAATTCAATCGGCCATCAACTCCTGCCCGGACGGCTGCCCGTGCCACGTCACCTTCCCGGCGCCGGGGAAGTACCTGACGGCGACGGTGTTCCTGAGATCCGGCGTGGTGCTGAACGTGGAACCCGGGGCCACCATCCTTGGCGGCCCGAGGCTAGAGGATTACCCGAAGGATTCGTCGCGGTGGTATCTGGTTGTGGCGGAGAACGCGACGGACGTGGGAATCGGTGGCGGCGGTGTGGTGGATGGGCAGGCGGAGAAGTTTGTAGTGAGGAAAGATCCGAGGAAGAACGTCATGGTGAGTTGGAACCACACTGGGGCTTGCTTAGGTGATGAATGCAGGCCTAGGCTTATTGGTTTTCTTGGTTGCAACAATGTTAGAGTCTCCAACATTACTCTTAACCAACCTGCTTATTGGTGCTTACACATGGTACGGAGTGAAAACATAGCCATTGAGGATATTAAAATTTATGGGGACTTAAATATACCAAACAATGATGGGATTGACATTGAGGACTCAAACAACACAGTAATCACTCGATGCCATATCGATACAGGGGATGATGCAATCTGTCCAAAGTCATCCACAGGTCCTGTTTACAACTTGACAGTCACCAACTGTTGGATTCGATCCAAATCTTCTGCCATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGACAATATCACTATTGTTGATTCTCACAGAGGGCTTGGATTCCAAATCCGTGATGGAGGAAATGTAAGTGACATTGTCTTCTCAAACATAAATATCAGCACAAGATACTATGACCCATCATGGTGGGGGAGAGCGGAGCCTATCTATGTCACAACTTGCCCACGAAACTCAGCCTCAAAGGAGGCTTCAATCTCAGATGTACATTTCATTAACATTACAGCAAATTCTGAAAATGGCATCTTCTTGTCTGGTTCAGAGAGAGGACTGTTAAGAAATTTGAGATTCATCAACATGAATATCACTTATAGAAGGTTCACCAGTTATGCTGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAATTGGTTAAACACGGGACTGCTGGTATGATGATGGAACACATTGAAGGTCTTGAGGTTAAAAATGTAGAAATGAGATGGGAAAACAGTCAAATAGAGCAGTGGAATAATCCTCTGGAGTTCAGGCCATCTACTGTGAATAACATCTCTTTCTTTAATTTTAATTCTGTTTTGCATACAAAAAATAGCAAATCAAGTTAA 1407 0.4641 MDKPPFFIFQIILFLLIQSLLATSHPPNPIPVTVYVADFGAAGDGVRYDTVAIQSAINSCPDGCPCHVTFPAPGKYLTATVFLRSGVVLNVEPGATILGGPRLEDYPKDSSRWYLVVAENATDVGIGGGGVVDGQAEKFVVRKDPRKNVMVSWNHTGACLGDECRPRLIGFLGCNNVRVSNITLNQPAYWCLHMVRSENIAIEDIKIYGDLNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTNCWIRSKSSAIKLGSASWFDFKHFVFDNITIVDSHRGLGFQIRDGGNVSDIVFSNINISTRYYDPSWWGRAEPIYVTTCPRNSASKEASISDVHFINITANSENGIFLSGSERGLLRNLRFINMNITYRRFTSYAGGLLDYRPGCQELVKHGTAGMMMEHIEGLEVKNVEMRWENSQIEQWNNPLEFRPSTVNNISFFNFNSVLHTKNSKSS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02856 468 SUPERFAMILY Pectin lyase-like 15 388 IPR011050 -
Rops8g02856 468 SMART pbh1 304 334 IPR006626 -
Rops8g02856 468 SMART pbh1 224 245 IPR006626 -
Rops8g02856 468 SMART pbh1 341 366 IPR006626 -
Rops8g02856 468 SMART pbh1 197 223 IPR006626 -
Rops8g02856 468 SMART pbh1 250 271 IPR006626 -
Rops8g02856 468 Pfam Glycosyl hydrolases family 28 113 384 IPR000743 GO:0004650|GO:0005975
Rops8g02856 468 Gene3D - 15 392 IPR012334 -
Rops8g02856 468 PANTHER PECTIN LYASE-RELATED 29 425 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02856 17 463 Glycoside Hydrolase AT3G57790 65.435 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02856 - - gmx:100794954 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02856 8 64276180 64279849 Rops8g02856 8 64276180 64279849 ECH