Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02810 ATGGCCACCACCACCGCACCTCACTGCGTCGTCCAACTCTCCGGCGCCACCGAGTCGACTGGCCCGAGAAAGACCACCATCACATGCAAGAAGAAGTCTAACGAGTTGGCATTCAAGGAAACGAAGCAAGGCTTCGTGGATTATGACAGAGGGCAACACGAGGTCTCCACCAATATCCCCGGCCTCCGCAAGGACGACATCCCCGCCCGTTACCGCCTCCGAGTCGCCGGAAACCGCTTCCAGATGGACTGGACGGTGTCCGAGGTTGTCGACTTGGTCCTTTCCGGCTCCCTTCGTGAAGACGACGTTGAAGGTCTACTCAACCGCTGGGTAGGGCGCTTCGCACGCAAGAATTTCCCTTTCCTCATTAGGGAGTTGACACAGAGAGGGTCCATTGAACACTGTAACTTAGTTTTCCGATGGATGAAGAACCAGAGGAATTACTGTGCCCGCACCGATATATACAACATGATGATTAGGTTGCACGCCAGGCACAATCGAACCGACCAGGCACGTGGATTGTTTTTTGAGATGCAAAAATGGAGGTGCAAACCTGATGCTGAGACATACAATGCTCTTATCAATGCACATGGTCGAGCTGGACAATGGCGATGGGCCATGAATATCATGGAAAACATGCTGCGTGCTGCTATTCCACCGAGTCGGTCAACTTATAACAACTTGATAAATGCCTGTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATGTTTGCAGGAAAATGACTGATAATGGAGTTGGGCCTGATCTTGTCACTCACAATATTATGTTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTCTGTCATATTTTGAACTAATGAAGGGAACTCACATTCGTCCTGACACAACTACACTTAATATTGTTATCCACTGTCTAGTGAAGCTTCGACAATATGACAAAGCCATTGATATTTTTAATTCCATGAGGGAAAAGAAGTCCGAATGCCCCCCTGATGTTGTAACATTCACTAGTATCATTCACTTGTATTCTGTATGTGGGCAAGTTGAAAGTTGTGAGGCTGCATTCAATATGATGCTTGCAGAAGGGCTGAAACCAAATATAGTCTCATATAATGCACTAATAGGTGCATATGCTGCTCGTGGGATGGAAGATGAGGCACTAAGGGTTTTTAATGAGATAAAACAAAATGGTTTCCGCCCAGACATTGTATCTTATACATCTCTGCTTAATGCTTACGGAAGATCACAAAAGCCCCGAAAATCAAGGGAAGTATTCAAAATGATAAAGAAAAACAACTTGAAGCCAAACCTTGTCAGTTACAATGCACTGATTGATGCCTATGGATCTAATGGTTTGCTGGAGGATGCAATTAAAATCTTGAGGGAAATGGAACAAGATGGAATTGAGCCCAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCAGAAGGTGAAGATTGATACTGTGCTATCAGCAGCTGAGATGCGAGGCATTAAATTGAACACAGTGGCATATAATTCAGCTATAGGAAGCTATATTAATGTGGGGGAATATGACAAAGCTATAAGTTTGTATAAATCTATGAAGAAGAAAAAACTAAAAGCTGATTCTGTCACTTACACTGTCTTGATAAGTGGTTGTTGCAGGATGTCCAAATATGGTGAAGCCCTATCTTTTATGGAAGAAATGATGCATTTAAAACTTCCTATGTCCAAAGAGGTCTACTCATCTGTCATATGTGCCTATAGCAAACAGGGCCAAATCACAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGCAATCCAGATGTGGTTACATATACTGCAATGCTTGATGCTTACAATGCAGCTGAGAATTGGGAGAATGCATATGCACTCTTTGAAGAAATGGAAGCAAATGACATCAAGCTAGATACTATCGCATGTGCAGCTATAATGAGAGCTTTTAATAAAGGTGGCCAACCAAGAAGGGTTCTTAGTCTTGCAGAAAGAATGAGAGAAAAAGAGATCCCTTTAAGTGATACTATATTTTTTGAAATAGTATCTGCCTGTAGCTTACTACAAGATTGGAAGACAGCTCTTGATATGATCAAGTACATAGAGCCCTCACTTCCTGTAATTTCTTCTGGATGTTTGAATCTGTTCCTGCATTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCATCAGGTGCTGATGTTAACTTCAATACTTATTCTATTTTATTGAAGAACCTTTTATCCTCTGGAAATTGGAGGAAATATTTAGAGGTACTGCAATGGATGGAAGATGCAGGAATTCATCCATCAAATGAAATGTACCACGATATATCCTCCTTTTCACAAAAATGCTGTGGGGCTGAAAATGCTGCTGTCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCCGAGGATCAAACTTCTGCAAGCCAACCATCTGCTGTTCTTAGTTGA 2496 0.4199 MATTTAPHCVVQLSGATESTGPRKTTITCKKKSNELAFKETKQGFVDYDRGQHEVSTNIPGLRKDDIPARYRLRVAGNRFQMDWTVSEVVDLVLSGSLREDDVEGLLNRWVGRFARKNFPFLIRELTQRGSIEHCNLVFRWMKNQRNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMENMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCRKMTDNGVGPDLVTHNIMLSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIDIFNSMREKKSECPPDVVTFTSIIHLYSVCGQVESCEAAFNMMLAEGLKPNIVSYNALIGAYAARGMEDEALRVFNEIKQNGFRPDIVSYTSLLNAYGRSQKPRKSREVFKMIKKNNLKPNLVSYNALIDAYGSNGLLEDAIKILREMEQDGIEPNVVSICTLLAACGRCSQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAISLYKSMKKKKLKADSVTYTVLISGCCRMSKYGEALSFMEEMMHLKLPMSKEVYSSVICAYSKQGQITEAESTFNLMKSSGCNPDVVTYTAMLDAYNAAENWENAYALFEEMEANDIKLDTIACAAIMRAFNKGGQPRRVLSLAERMREKEIPLSDTIFFEIVSACSLLQDWKTALDMIKYIEPSLPVISSGCLNLFLHSLGKSGKIETMLKLFFKMLASGADVNFNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSNEMYHDISSFSQKCCGAENAAVIKERLESLKRKSEDQTSASQPSAVLS* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Rops8g02810 831 SUPERFAMILY TPR-like 291 701 IPR011990 GO:0005515
Rops8g02810 831 FunFam Os07g0213300 protein 268 382 - -
Rops8g02810 831 FunFam Pentatricopeptide repeat-containing protein At2g41720 656 831 - -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Rops8g02810 831 FunFam Pentatricopeptide repeat-containing protein At2g41720 88 249 - -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Rops8g02810 831 Gene3D Tetratricopeptide repeat domain 568 679 IPR011990 GO:0005515
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 294 324 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 365 399 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 505 538 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 400 433 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 224 256 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 610 644 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 330 364 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 435 469 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 189 221 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 258 292 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 154 187 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 540 570 IPR002885 -
Rops8g02810 831 NCBIfam pentatricopeptide repeat 576 609 IPR002885 -
Rops8g02810 831 Gene3D Tetratricopeptide repeat domain 97 232 IPR011990 GO:0005515
Rops8g02810 831 Gene3D Tetratricopeptide repeat domain 680 819 IPR011990 GO:0005515
Rops8g02810 831 Pfam Pentatricopeptide repeat domain 631 675 IPR002885 -
Rops8g02810 831 Pfam Pentatricopeptide repeat domain 736 784 IPR002885 -
Rops8g02810 831 Pfam Pentatricopeptide repeat domain 450 480 IPR002885 -
Rops8g02810 831 Pfam Pentatricopeptide repeat domain 385 447 IPR002885 -
Rops8g02810 831 FunFam Pentatricopeptide repeat-containing protein isoform A 463 569 - -
Rops8g02810 831 Pfam PPR repeat family 290 337 IPR002885 -
Rops8g02810 831 Pfam PPR repeat family 503 551 IPR002885 -
Rops8g02810 831 Pfam PPR repeat family 154 196 IPR002885 -
Rops8g02810 831 Pfam PPR repeat family 224 267 IPR002885 -
Rops8g02810 831 Pfam PPR repeat family 576 619 IPR002885 -
Rops8g02810 831 Gene3D Tetratricopeptide repeat domain 392 462 IPR011990 GO:0005515
Rops8g02810 831 Gene3D Tetratricopeptide repeat domain 463 567 IPR011990 GO:0005515
Rops8g02810 831 Gene3D Tetratricopeptide repeat domain 245 321 IPR011990 GO:0005515
Rops8g02810 831 Gene3D Tetratricopeptide repeat domain 322 391 IPR011990 GO:0005515
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 748 782 IPR002885 -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Rops8g02810 831 SUPERFAMILY TPR-like 185 318 IPR011990 GO:0005515
Rops8g02810 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 643 677 IPR002885 -
Rops8g02810 831 PANTHER OS03G0856100 PROTEIN 74 494 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02810 236 796 Glycosyltransferase AT1G05670 23.264 9.94e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02810 - - gmx:100814643 1447.18