Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02789 ATGGGTAGGTGGAGGTGGTGCACGTTGGTTTTCAATTTTGTTTCTTTGTTAATAATAACCGGAGCCATCTTGGAAGTGAAGACAGTGGTGGCTGTGAAGGGTGTTCCACTTGAGACAAATTCAAGGTGGATAGTGAACCAAGATGGGCAAAGGGTGAAGCTGGCGTGTGTGAATTGGGTGTCTCATATGGAAGCTGTGGTGGCTGAGGGGCTGAGCAAGCAACCTTTGGATGTGATTTCAAAGGGAATCAAGTCCATGGGCTTCAACTGTGTTAGGCTCACTTGGCCTATTCTCCTTCTCACCAATGACTCTCTTGCTTCTCTCACTGTTAGACACTCCTTTCAGAACCTTGGCCTCCTTGAATCTGTTGCTGGATTGATACTGATAACATCTTTAATCTGCCATGCCAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCGGATGATAAAAAACCTCTCAAAGATATATCAGTTGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTTTATCCCCATGTTTCAAAAATAATACCAAACTGGTATGCAAAGGAAGAGGATTTGAAGAACCTTTGCAGCCCTTGA 621 0.4412 MGRWRWCTLVFNFVSLLIITGAILEVKTVVAVKGVPLETNSRWIVNQDGQRVKLACVNWVSHMEAVVAEGLSKQPLDVISKGIKSMGFNCVRLTWPILLLTNDSLASLTVRHSFQNLGLLESVAGLILITSLICHARRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02789 206 SUPERFAMILY (Trans)glycosidases 36 103 IPR017853 -
Rops8g02789 206 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 24 127 - -
Rops8g02789 206 Gene3D Glycosidases 30 105 - -
Rops8g02789 206 Pfam Transcription factor TFIIB repeat 137 184 IPR013150 GO:0017025
Rops8g02789 206 PRINTS Transcription initiation factor IIB signature 138 154 IPR000812 GO:0006352|GO:0070897
Rops8g02789 206 PRINTS Transcription initiation factor IIB signature 170 184 IPR000812 GO:0006352|GO:0070897
Rops8g02789 206 Gene3D - 106 205 - -
Rops8g02789 206 SUPERFAMILY Cyclin-like 135 203 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02789 Rops-Chr8 62937667 62938847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02789 36 126 Glycoside Hydrolase AT5G16700 67.391 1.65e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02789 - - gmx:100790415 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02789 8 62937667 62938847 Rops8g02789 8 62937667 62938847 ECH