Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02706 ATGTGGGCTCTTCGTCGAGCTTCGCTTCCTCTCAGGAAGAGAGGATTGAATGTAAGGGTTTCTTGTGTCAAATTAATGCCAACTACTTGTGTGGAAGATGAGGTTGGAATCTCTGATTCTCCTCAAATAGTGTATGGTGGATTTTCATCACTTAATAGATGTTACCATTCAGGACATGATTCTCTGAAATTTACTGTGAGGAGACTAGAATTTTCTTCACAAGCTGGTGCTGATAGTACGAAAGAGGAGGAGGATTTGGAGGATGGGTTTTCCGAACTGGAGTCAACGGCTGGTGATGAGAATGTAAATAAATCGAATTCTGATACTGACCTATCTGATGACAATGAGGATGTTGAGCGACCACCCAATGAGCTGGAGTTATCGGATGCGGAGATTGATGAACCGGCTGAGAAAAAATCACCCCACAAAAGGGTTGAGTCAGAATTATTCAAGGAGATCATGGATGCTCCAGGGCTTTCTGTTCATTCGGCTCTAGATAAGTGGGTTGAAGATGGGAAGGAATTAAGCAGACAAGAGATCTCTCTGGCCATTGCCAGTCTTCGGAGGTTTAAAATGTATGGGAGAGCTTTGCAGCTCTCAGAGTGGCTCGAGTCAAAAAAACAGCTTGAATTTACTGAAGGGGATTATGCTTCTCGACTTGATTTAATTGCCAAATTGCGTGGCCTCCAGAAGGCAGAGGTTTACATTGAAACTATTCCTGAATCTTTCAGAGGGGAGATAATATATCGAACTTTATTGGCTAACTGTGTTAGTCTGGGCAATTTGAAGAAAGCAGAGGAAATTTTTAGTAAAATGAAGGATTTGGGTTTTCCTGTTACAGCATTTGCATGCAATCAGTTGCTTCTTCTGTATAAGAGGAATGACAAGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAACGAAAATGTCAAACCTTCTCCTCTTACTTATAAAATCTTAATAGACGTAAAAGGCCAGTCCAAAGATATTGATGGAATGGATCAAATTGTTGATAAAATGAAGGCTGAAGGCTTTGAACCGGACATCCGAACAAAGGCAGTTTTGGTTGGGCATTACATCTCAGCTGGGCTTCAAGATAAAGCTGACACTTTATTGAAAGAGATTGAAGGTGAAAACTTGAAACAGAATCGGTGGGTATGCCGAATTTTACTTCCCCTCTATGCAAAATTTGGAAAGGCAGATGAAGTTGGAAGAATTTGGAAGGTCTGTGAGAATCACCCTCGGGTTGAGGAGTGTCGAGCTGCAATTGAAGCTTGGGGGAAATTAATGAAAATTGATGAAGCTGAGGCAGTTTTTGAGATGATGTCAAAAAAATGGAAACTTTCTTCCAGGAGCTGCTCAGCACTACTAAATGTTTATGCAAATCATAAGATGCTAATGAAGGGTAAGGATCTTATTAAGCAAATGGCGGATAGTGGGTGCCGAATAGGCCCATTAACCTGGGATGCAATAGTGAAACTTTATGTCCAAGCAGGGGAAGTGGAGAAGGCAGACTCAGTTCTGCAGAAGGCAATCCAGCAGAGCCAGTTGAAACCACTATTTTCTTCCTACATTACTGTTTTGGAGCAATATGCTAAGAGGGGTGACATCCATAATTCAGAAAAGATTTTCTATAGAATGAAACAAGCTGGTTATTCATCTCGACCAAGGCAGTACCACGTTCTACTACAGGCCTATATCAATGCCAAGCTCCCAGCCTATGGTATGAGGGACAGGATTAAAGCTGATAATGTATTTCCCAACAAATCTTTGGCGAACCAATTGGCTCAAGTTGATGGATTCAGGAAGAATCCAGTTTCTCATTTGCTTGATTGA 1839 0.4127 MWALRRASLPLRKRGLNVRVSCVKLMPTTCVEDEVGISDSPQIVYGGFSSLNRCYHSGHDSLKFTVRRLEFSSQAGADSTKEEEDLEDGFSELESTAGDENVNKSNSDTDLSDDNEDVERPPNELELSDAEIDEPAEKKSPHKRVESELFKEIMDAPGLSVHSALDKWVEDGKELSRQEISLAIASLRRFKMYGRALQLSEWLESKKQLEFTEGDYASRLDLIAKLRGLQKAEVYIETIPESFRGEIIYRTLLANCVSLGNLKKAEEIFSKMKDLGFPVTAFACNQLLLLYKRNDKKKIADVLLLMENENVKPSPLTYKILIDVKGQSKDIDGMDQIVDKMKAEGFEPDIRTKAVLVGHYISAGLQDKADTLLKEIEGENLKQNRWVCRILLPLYAKFGKADEVGRIWKVCENHPRVEECRAAIEAWGKLMKIDEAEAVFEMMSKKWKLSSRSCSALLNVYANHKMLMKGKDLIKQMADSGCRIGPLTWDAIVKLYVQAGEVEKADSVLQKAIQQSQLKPLFSSYITVLEQYAKRGDIHNSEKIFYRMKQAGYSSRPRQYHVLLQAYINAKLPAYGMRDRIKADNVFPNKSLANQLAQVDGFRKNPVSHLLD* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02706 612 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 245 420 - -
Rops8g02706 612 PANTHER OS12G0527900 PROTEIN 72 592 - -
Rops8g02706 612 MobiDBLite consensus disorder prediction 106 145 - -
Rops8g02706 612 Pfam PPR repeat 524 552 IPR002885 -
Rops8g02706 612 Pfam PPR repeat 488 511 IPR002885 -
Rops8g02706 612 Pfam PPR repeat 453 482 IPR002885 -
Rops8g02706 612 Gene3D Tetratricopeptide repeat domain 245 417 IPR011990 GO:0005515
Rops8g02706 612 Gene3D Tetratricopeptide repeat domain 418 608 IPR011990 GO:0005515
Rops8g02706 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 520 IPR002885 -
Rops8g02706 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Rops8g02706 612 NCBIfam pentatricopeptide repeat 453 483 IPR002885 -
Rops8g02706 612 NCBIfam pentatricopeptide repeat 317 350 IPR002885 -
Rops8g02706 612 NCBIfam pentatricopeptide repeat 248 280 IPR002885 -
Rops8g02706 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Rops8g02706 612 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 421 606 - -
Rops8g02706 612 MobiDBLite consensus disorder prediction 94 145 - -
Rops8g02706 612 Pfam Pentacotripeptide-repeat region of PRORP 249 407 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02706 Rops-Chr8 61182745 61187602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02706 149 552 EF-hand Containing Proteins AT1G02150 24.105 8.91e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02706 - - tpra:123891250 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02706 8 61182745 61187602 Rops8g02706 8 61182745 61187602 ECH