Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02694 ATGAATAATAATGCTGAAAGACCACTTAATGGAGATGTAGAAGAAGATGATGATGATGAAGCTAATGGAGGCCTTGAAGCCTGGGAGAGAACTTATGCAGAAGATAGATCATGGGAGTCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATTGATAATACAGCCATTCACCATGCCCAGTATCGCAGGCGCCTTCGTGCCCTTGCTTCCACAGCTGTTACTTCACGAATTCAGAAGGGTCTTATACGATACGTATACATCATTGTGGACCTGTCCAAGGCAGCTGCAGAGACGGACTTTCGACCAAGTAGGATGGCTGTTATTGGGAAACAGGTTGAGACATTTATTAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGTCTGGTGACTATAAAAGATGGGATTGCTCATCGCTTATCAGATCTTGGTGGCAGTCCTGAGGCGCATATTAAAGCTTTGATGGGTAAACTGGAATGCTCAGGTGATGCATCCCTACAAAATGCACTAGAGCTTGTTCTTGGCTATCTAAATCAAATCCCATCATATGGTCATCGAGAAGTTCTGATCCTATATTCAGCTCTCAGTACATGTGATCCGGGTGATCTCATGGAAACTGTCCAGAAATGCAAAAAGAGTAAAATAAGGTGCTCTGTCATTGGTCTTGCTGCGGAAATGTTTATATGCAAACATCTTTGCCAAGAAACTGGAGGAACTTATTCCGTTGCCCTAGACGAGTCCCACTTTAAAGAGTTAATACTAGAGCATGCTCCACCACCTCCAGCAATAGCAGAGTATGCTACTGCTAATTTAATTAAGATGGGTTTCCCACAAAGAGCAGCTGAGGGTTCTGTCGCAATTTGTACATGTCATGAAGAGGCTAAGACTGGAGGGGGATACACTTGTCCAAGGTGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGCATCTGTGGACTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTTTTTCCTATAGTGCCGTTTGATGAGGTCTCTCCATCATCTCGAAATGATCCAAGCCACAGTTTTCCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTCAGGGAAACAAGCCTGGACTTTCTGTTACTTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGCGACATCTACATTCATGAGAGCTTACATAACTGCCCAGGCTGTGAGAGTTTCAGGCATTCTAAAACTGCTGCTCAATGA 1260 0.4373 MNNNAERPLNGDVEEDDDDEANGGLEAWERTYAEDRSWESLQEDESGLLRPIDNTAIHHAQYRRRLRALASTAVTSRIQKGLIRYVYIIVDLSKAAAETDFRPSRMAVIGKQVETFIREFFDQNPLSHVGLVTIKDGIAHRLSDLGGSPEAHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLMETVQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSPSSRNDPSHSFPNTCFGCQQSLLSQGNKPGLSVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSKTAAQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02694 419 NCBIfam transcription factor ssl1 301 410 IPR012170 GO:0000439|GO:0006289|GO:0006351
Rops8g02694 419 SUPERFAMILY Cysteine-rich domain 336 409 IPR046349 -
Rops8g02694 419 ProSiteProfiles VWFA domain profile. 85 224 IPR002035 -
Rops8g02694 419 Pfam TFIIH C1-like domain 362 410 IPR004595 GO:0006281|GO:0008270
Rops8g02694 419 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 19 414 - -
Rops8g02694 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 417 IPR013083 -
Rops8g02694 419 ProSitePatterns Zinc finger C2H2 type domain signature. 383 403 IPR013087 -
Rops8g02694 419 SMART C1_4_2 362 410 IPR004595 GO:0006281|GO:0008270
Rops8g02694 419 SMART VWA_4 83 259 IPR002035 -
Rops8g02694 419 MobiDBLite consensus disorder prediction 1 26 - -
Rops8g02694 419 PIRSF TFIIH_SSL1 1 411 IPR012170 GO:0000439|GO:0006289|GO:0006351
Rops8g02694 419 FunFam General transcription factor IIH subunit 339 416 - -
Rops8g02694 419 FunFam General transcription factor IIH subunit 2 79 264 - -
Rops8g02694 419 Gene3D von Willebrand factor, type A domain 79 264 IPR036465 -
Rops8g02694 419 CDD vWA_transcription_factor_IIH_type 81 263 IPR007198 -
Rops8g02694 419 SUPERFAMILY vWA-like 81 248 IPR036465 -
Rops8g02694 419 Pfam Ssl1-like 89 279 IPR007198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02694 Rops-Chr8 60994596 61000290 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02694 K03142 - gmx:100803090 798.505