Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02664 ATGACAGAGGTGTTGATGTGTAGCAGCAGCAGCACTGAGTTGAGCCCAGATGAAGAGAGGATCATGATCAGAGACATTGCTCTTACTGCACAAGCTAACAGCAAAGAAGGGGACTCCTTCTTCTTGATCACCCAGAGATGGTGGCAGCATTGGATTGAATATGTGAACCAAGACCAGACAAGCACTTCGTACGACGGATCTTCCTTTCAAGAACATTGTGATTTGGCCAATTCAAGTGCTTTGAAGAGACCAGCTGGTATTGATAATTCTGATTTGATAGATGATGTTGCATCAGAGGACTCTGGTATGGGTATTGAGATTCATGATACTCTTTTAGAAGGCCGTGACTATGTATTACTTCCTCAAGAAGTTTGGAACCAATTATTTACATGGTATGGTGGTGGACCTACATTAGCAAGGAAAGTTATTAGTTCAGGTCTTTCCCAGACAGAATTGACGGTAGAGGTGTATCCTTTACGGCTTCAATTACTTGTGTTGCCAAAAAATGAACGTTCCACAATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAGAAAAGCTTGTGAAATATTTGATCTTCAGTTGGACCAAGTGCGCATTTGGGATTACTATGCCCGTCGGAAGCATGCCTTGATGAATGACATGGACAAGACTCTTGATGATGCCAATTTACAAATGGACCAAGATATTCTTGTTGAGGTCCTCAACAATACAAATAGCACAAGTTCTGCTCAAGAAAATGGATCAGTACAGAGGGAAGCAAATTCTGTTCTGGTGGAGCCTTCAAAATCAAGCTTATCAATTGCTGGTGGCCTGTCTGCTAGCAAGGGTGCATCTAGAGGCTACAATACGGAACTTTCTTCATCTCAGAGCCTAAATTCTCCTATCAGAGATGTGGAAAACCCTTATGGAACCAGTGGTGTCACCACAAGAGGTTCATTCGGTGGGCTCACTGGGTTGCTGAATCTTGGCAATACTTGTTTCATGAATAGTGCAATACAGTGTCTTGTTCATACACCCGAATTTGCTAGCTACTTCAGGGAGGATTATCATCGAGAGATAAATTGGCAAAATCCTTTGGGCATGGTTGGTGAACTAGCCCTAGCATTTGGTGAGTTGCTTCGAAAACTATGGGCACCTGGGCGAACACCAATTGCTCCCCGGCCTTTTAAAGCAAAGCTTGCTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAGCATGATTCTCAGGAGCTTTTGGCATTTCTGCTGGATGGTCTCCATGAAGACTTGAATCGTGTAAAGCACAAACCATATATAAAGTCTCGAGATGCTGATGGGCGACCTGATGAAGAAGTGGCTGATGAGTATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTGTGCCAGGGGCAATACAAGTCAACTTTGGTTTGTCCAGTTTGCAATAAGGTTTCTGTCACATTTGATCCTTTTATGTACCTCTCCCTGCCTCTCCAGTCCACTAGCAGTAGGACCATGACAGTGACAGTTTTTACTAGTGATGGAATTACCCTGCCATCTCCTTGTACAGTAACTGTGCCCAAGCAGGGACGATGCAGAGATCTTATCCAGGCACTTAGCAATGCTTGCTCATTGAAGCATAATGAGAGGCTATTGCTTGTGGAGATACGAAACCATTTGATCAATAATTTTGAAGATCCTCTTCTATTGTTGTCCTCAATCAAAGATGATGACCGTCTTGCTGCTTACAAGATTCCAAAGATAGACAAAAACACAAAGTATCTCCAGTTGATACATCGCTGTAGAGAGCAGAGTAGTGACTCACAGGCCATATCAGGATGGAAACCATTTGGAACACCTATTGTTTCATTGATCTCATGTGATGATCCGGTTACAAGAGGTGATATACAAGTAATAGTTAACCGTATGCTCTCTCCTCTGCTGAGGAAAGGTGGCAATGTAGAACAGGCTGTTAATTCTGAATACAGCACACCAAAAGCAACATCTGACCATTGCAATGATGCATGTGCTGCCAACATAGGGTCAAATCCAGTAAATAAGGATGCTACCGTTTCCAAGGCACCAACAATCCCGACATTACCGCTTCTGTTGGTAGCTGAGAGCAATGCTTGCATTGATCTATCAATGGGAGAGGATAAAGTAGTTAAACTGTCCCCATCAACAACAACAGTTCTAGTGTATATGGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATCCACTTGAGACTTTGCCAGAGGTCTTGAAATACGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCCTGTACACCTGCTTGGAAGCTTTTCTGCGTGAAGAACCTCTAGTGCCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGGCGACAAGCAAGCAAAAAGCTTGATCTATGGAGGCTCCCAGAGGTTTTGGTCATTCATTTAAAGAGGTTCTCATACAGCAGATCAATGAAGCATAAACTAGAGACTTTTGTTAACTTTCCCATTCATGATTTTGATTTAACAAATTACATAGCCAACAAAAACAACTCTCGGCGTCAACTGTACGAACTGTATGCCCTTACAAATCATTATGGTAGCATGGGTAGTGGGCATTACACGGCACATATTAAGCTTTTAGATGAAAACAGGTGGTACAATTTTGATGACAGCCACATATCACCCATAAATGAAGATGAGGTTAATACTGCTGCTGCCTATGTTCTATTTTACAGGAGGGTGAAGACTGATGATGCCCCTGTAAGCAATGGGGCCTAG 2793 0.4286 MTEVLMCSSSSTELSPDEERIMIRDIALTAQANSKEGDSFFLITQRWWQHWIEYVNQDQTSTSYDGSSFQEHCDLANSSALKRPAGIDNSDLIDDVASEDSGMGIEIHDTLLEGRDYVLLPQEVWNQLFTWYGGGPTLARKVISSGLSQTELTVEVYPLRLQLLVLPKNERSTIRISKKETIGQLHRKACEIFDLQLDQVRIWDYYARRKHALMNDMDKTLDDANLQMDQDILVEVLNNTNSTSSAQENGSVQREANSVLVEPSKSSLSIAGGLSASKGASRGYNTELSSSQSLNSPIRDVENPYGTSGVTTRGSFGGLTGLLNLGNTCFMNSAIQCLVHTPEFASYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLARFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTSSRTMTVTVFTSDGITLPSPCTVTVPKQGRCRDLIQALSNACSLKHNERLLLVEIRNHLINNFEDPLLLLSSIKDDDRLAAYKIPKIDKNTKYLQLIHRCREQSSDSQAISGWKPFGTPIVSLISCDDPVTRGDIQVIVNRMLSPLLRKGGNVEQAVNSEYSTPKATSDHCNDACAANIGSNPVNKDATVSKAPTIPTLPLLLVAESNACIDLSMGEDKVVKLSPSTTTVLVYMDWSQKLLEKYDTHPLETLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISPINEDEVNTAAAYVLFYRRVKTDDAPVSNGA* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02664 930 SUPERFAMILY Ubiquitin-like 161 236 IPR029071 -
Rops8g02664 930 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Rops8g02664 930 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Rops8g02664 930 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 861 878 IPR018200 GO:0004843|GO:0006511
Rops8g02664 930 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Rops8g02664 930 CDD Peptidase_C19R 764 917 - -
Rops8g02664 930 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Rops8g02664 930 Gene3D - 157 246 - -
Rops8g02664 930 Gene3D - 6 156 IPR035927 -
Rops8g02664 930 MobiDBLite consensus disorder prediction 277 306 - -
Rops8g02664 930 SMART dusp 33 146 IPR006615 GO:0004843
Rops8g02664 930 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 919 IPR028889 -
Rops8g02664 930 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 231 918 - -
Rops8g02664 930 Pfam Ubiquitin carboxyl-terminal hydrolase 320 916 IPR001394 GO:0004843|GO:0016579
Rops8g02664 930 Gene3D Cysteine proteinases 733 925 - -
Rops8g02664 930 Gene3D Cysteine proteinases 310 544 - -
Rops8g02664 930 SUPERFAMILY Cysteine proteinases 318 919 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02664 Rops-Chr8 60408364 60424978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02664 772 921 Miscellaneous Gene Families AT4G31670 33.987 3.12e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02664 - - gmx:100794067 1679.46