Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02647 ATGGCCAAAGGCGTGATATCTGATGAAGAAGATGACGTCGAACTCGACGAGGATGAGAGGGAACCCGTTGATGGGGATGGATTGGAAGAGGGTCGCGATATGGACGATGACGAAGAGGATGAAGAAGAGGGGCAGGATGAATATGAAAAGGATGGATTTATAGTGGACGACATTGAGGATGAAGAGGAGCAGGATGAAGAGGAGAGAGCAGAAAGTGATGAAGAGCGACAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTCGACGAAGACGATTACGAGTTGCTGGAGGACAATAATATCAATATTCATCGTCGGAAGGAGAGCAAAAAGTTCAAGCGGCTGAAGAAAGGCCAGAGGGATGCTGAGGAGGAGCCCTCTGGACTATCTGATGAAGAAGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGCGATGATGATGGAGCTTCACTTGAAGACATTGCTGAAGAGGAGGAGCAAGGAGAAGAGGAGGAGGTTATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGAAGAAGAAGAAGTTGATGAGAATGGAGCCCCTATGAGGCGTAGGAAGCTGAAGAGAAAAAAACCTAGGCAGGCACCTGGAGTCTCTTCCTCAGCCTTACAAGAAGCTCAAGAATTATTTGGTGATGTCGATGAGTTGATTGAGGCACGCAATCAAAGTCGAGAATTGAATGATTATAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTTTCTGAGAAATATATGACAGAGAAGGATGACCAGATCAGGGAGATCGATATTCCAGAGAGAATGCAGATCTCAGAGGAGAGTACTGGTGCTCCTCCTCTGGATGGAAGTAGTATAGATGAAGAGAGTCAGTGGATAGTTAATCAGCTTGGAAATGGAGCAGTCCCTTGGATTTGCAAGAAAGTCTCAAGCTCCCAAAATAATGGAAAGGACCTACCAATTGACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAATTAGATATTCCTTTTATTGCCATGTATCGGAAGGAGGAGTGCTTAAGCCTATTGAAAGACCTAGAGCGACCTGAAGCTGGTGATGAGAATCGGGATAAGAATAACAAGACACCTACTCTAAAATGGCACAAGATACTTTGGGCACTACAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAATCATACTACAGTAAACGGTTTGAAGAAGAGCCTGGCCGTGTTTATGATGAAACAAGACTAAACTTGAATAGGCAATTGTTTGAATCAGTTATGAGATCACTGAAGGAGGCAGAATCTGAGAGGGAGATTGATGATGTTGACTCCAAGTTCAACCTGCATTTCCCACCGGGTGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCAAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCGGGTCTGTGGGAGGTTGCAAGCAGGTTTGGGTGTAGTTCTGAGCAACTTGGATTATGTCTATCTCTAGTTGAGCTGCATGAGTTGGAAGATCCAAAGGAAACACCAGAAGAGATGGCTTCTAACTTTACATGTGCTATGTATGATACCCCTGAAGAAGTACTTAAATGTGCTAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCAAGCATTAAGAAACATGTTCGTAGCCACTTTCTTGACCATGCTGTGGTGTCAACTTGTCCTACTGCTGATGGAAATGTAACAATAGATGCTTTCCATCAGTTTGCTGGGGTGAAGTGGCTGCGAGAGAAGCCTTTGTCTAAATTTGAGGATGCGCAATGGCTCCTTATACAGAAGGCAGAAGAGGAAAAACTCATTCAAGTTACAATTAAGCTGCCTGAAGAGTATCTTAATAAGTTAATAGATCAATTCAATGAGTATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTTGATACTGCATGATGCAATTTTTCGATTTCTTTTACCATCAATGGAAAAAGAAGCAAGAGGTATCTTGGCAAGCAAAGCTAAGAATTGGTTACTTATGGAGTATGGGAAGGCCTTGTGGAATAAGGTTTCTGTGGGTCCTTATCAACAGAAGGAAAATGATCTTAGCTCAGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTGTTGGGGCCCTGGAAAACCTCAAACAACTTTTGTTATGTTAGATTCATCAGGAGAAGTACTAGATGTGCTTTACACTGGGTCACTTACTTTAAGGTCACAAAATGTCAATGACCAACAAAGAAAAAAGAATAATCAGGAACGTGTATTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACTCGTTTGAAGGATGATATATATGAGGTCATTTTTAAGATGGTGGAGGAAAATCCTAGAGATGTTGGTCATGAAATGGATGGGCTCAGCATTGTATATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGATCAACTTCCTTCACAGCAAGGAATAGTGAGGCGGGCTGTTGCTCTTGGTCGATATCTCCAGAACCCATTGGCGATGGTTGCGACATTATGTGGACCCCGAAGGGAAATATTATCATGGAAACTTAGCTCTATGGAAAGCTTTCTCAACCCAGACGATAAATTTGGAATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAGTGGTTATTTGCTCCATTACAATTTATTTCTGGGCTTGGTCCACGGAAGGCTGCATCATTACAGAGATCGCTGGTAAGAGCTGGTGCAATTTTTACTCGGAAGGACTTTGTGACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTGGATGATACAAGAATTCATCCAGAATCTTATATTCTCGCACAAGAGTTGGCCAAAGATGTGTATGAGGAAGATGGCACAGGTGATGCAAATGATGATGATGATGCGCTGGAGATGGCCATAGAACATGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTGCTGGGAAAGATCGTCAGAACAAAATAGAAACTTTCCATGATATAAAAAGAGAATTGATTCAAGGTTTTCAGGATTGGCGTAAGCAATATATTGAACCAAGTCAGGATGAGGAGTTCTATATGATTTCAGGTGAGACTGAAGAAACCCTTGCTGAAGGTAAAATCGTCCAAGTTACAGTTCGCAGAGTGCAAGCCCAGAAAGCAATATGTGTGCTTGAATCTGGATTGACTGGAATCCTAATGAAAGAAGACTATACAGATGACTGGAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACCTGTAAAATCAAGTCAATCCAAAAGAATAGATATCAGGTCTTCCTTGTTTGTAGGGATAGTGAGATGAGAAGTAATCGGTTACAGAATAACCGTGATCTTGATCCCTATTTCCATGAAGATCGGAGCTGCTTACAGGGTGAACAAGACAAAGCTCGGAAAGAAAAGGAGCTTGCAAAGAAGCATTTCAAGCCAAGGATGATAGTTCATCCACGCTTTCAGAACATAACTGCTGATGAAGCAATGGAGTTTTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGCCCTAGTTCACGTGGACCCTCATATCTTACTTTAACACTTAAAATTCATGATGGAGTATATGCCCACAAGGATATAGTTGAAGGTGGGAAGGAACACAAGGACATTACAAGCTTACTTCGAATTGGGAAGACACTAAAAATTGGAGAGGACACTTTCGAGGATTTAGATGAGGTTATGGACCGTTATGTTGATCCCTTGGTTACACACTTAAAGGCAATGTTAAACTATCGCAAGTTCAAGAAGGGCACAAAAGCAGAAGTTGATGAACTTTTGAGGATGGAAAAAGCCGAGTATCCTATGCGCATAGTCTATGGTTTTGGCATCTCCCATGAACATCCTGGCACATTTATATTAACATATATAAGAAGTACAAATCCACACCATGAGTACATTGGACTTTACCCAAAAGGATTCAGGTTCCGGAAAAAGATGTTTGAGGATATTGATCGACTTGTGGCTTATTTTCAGAGGCATATTGATGATGCCCAAAATGATTCAGCCCCCTCCATTAGATCAGTAGCTGCTATGGTACCGATGCGAAGCCCTGCAGCTGGTGGCTCATCAGGGGCATCTGTGGGTAGTGGCTGGGGTGGTTCAAACAGTGAGAGTGGCTGGAGAGGTCACTCTTATGATAGGGATCGATCTTCTACTCCTGGTTCCAGGACAGGACGGGCTGATTACAGAAACAATGGGAATCGAGATGCACACCCTAGTGGAGTGCCTCGTCCACATGGTGGTGGACGAGGACGTGGTCGAGGTTCTTATAACAATAGTAGAGGACACAACTCCAATAATGAAAGGCAGGACTCTGGTTATGGTGCAGGCAGATGGGGTTCTGTTGCAAAGGATGGGGATGATGGTTTAGGCAATTTTCCAGGGGCTAAAGTTCAAAATTCGCCTGGAAGGGAAGCATTTCCTGGTGGTTGGGGAGGTGGAGCTGGGACTAGTGACAATGGTGGCTGGGGACATGGGAGTGGTGGTACTGGTCCAAGTGATACTGCTGATGGCTGGGGGGGATCTGGCTCCAAGAGAGCAGCTGAGAATGGATGGTCTGGAAATTCTGGTGGCGGCACTGGTTGGTGA 4902 0.4325 MAKGVISDEEDDVELDEDEREPVDGDGLEEGRDMDDDEEDEEEGQDEYEKDGFIVDDIEDEEEQDEEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDAEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDDGASLEDIAEEEEQGEEEEVIGEDDEMADFIVEEEEVDENGAPMRRRKLKRKKPRQAPGVSSSALQEAQELFGDVDELIEARNQSRELNDYRETRLEDEFEPIVLSEKYMTEKDDQIREIDIPERMQISEESTGAPPLDGSSIDEESQWIVNQLGNGAVPWICKKVSSSQNNGKDLPIDKDDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKDLERPEAGDENRDKNNKTPTLKWHKILWALQDLDKKWLLLQKRKSALQSYYSKRFEEEPGRVYDETRLNLNRQLFESVMRSLKEAESEREIDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSSEQLGLCLSLVELHELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIKKHVRSHFLDHAVVSTCPTADGNVTIDAFHQFAGVKWLREKPLSKFEDAQWLLIQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGILASKAKNWLLMEYGKALWNKVSVGPYQQKENDLSSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNNQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSDQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRREILSWKLSSMESFLNPDDKFGMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYAAGKDRQNKIETFHDIKRELIQGFQDWRKQYIEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICVLESGLTGILMKEDYTDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCRDSEMRSNRLQNNRDLDPYFHEDRSCLQGEQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKIHDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFKKGTKAEVDELLRMEKAEYPMRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDAQNDSAPSIRSVAAMVPMRSPAAGGSSGASVGSGWGGSNSESGWRGHSYDRDRSSTPGSRTGRADYRNNGNRDAHPSGVPRPHGGGRGRGRGSYNNSRGHNSNNERQDSGYGAGRWGSVAKDGDDGLGNFPGAKVQNSPGREAFPGGWGGGAGTSDNGGWGHGSGGTGPSDTADGWGGSGSKRAAENGWSGNSGGGTGW* 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02647 1633 Gene3D - 259 1000 - -
Rops8g02647 1633 Gene3D - 727 1117 IPR037027 GO:0006139
Rops8g02647 1633 Pfam Holliday-junction resolvase-like of SPT6 736 892 IPR028231 -
Rops8g02647 1633 FunFam Transcription elongation factor spt6 904 1000 - -
Rops8g02647 1633 Gene3D - 494 930 IPR023323 -
Rops8g02647 1633 Gene3D - 1118 1205 IPR012340 -
Rops8g02647 1633 Gene3D - 1006 1098 IPR042066 -
Rops8g02647 1633 Pfam Helix-hairpin-helix motif 896 997 IPR032706 -
Rops8g02647 1633 MobiDBLite consensus disorder prediction 138 160 - -
Rops8g02647 1633 MobiDBLite consensus disorder prediction 1 93 - -
Rops8g02647 1633 MobiDBLite consensus disorder prediction 1528 1543 - -
Rops8g02647 1633 Coils Coil 55 87 - -
Rops8g02647 1633 Pfam Acidic N-terminal SPT6 35 123 IPR028083 -
Rops8g02647 1633 FunFam Transcription elongation factor Spt6 1004 1098 - -
Rops8g02647 1633 Gene3D SH2 domain 1345 1442 IPR036860 -
Rops8g02647 1633 CDD SH2_Nterm_SPT6_like 1247 1335 IPR035019 -
Rops8g02647 1633 SUPERFAMILY Nucleic acid-binding proteins 1120 1200 IPR012340 -
Rops8g02647 1633 MobiDBLite consensus disorder prediction 1619 1633 - -
Rops8g02647 1633 FunFam Transcription elongation factor spt6 292 482 - -
Rops8g02647 1633 Pfam SH2 domain 1216 1431 IPR035420 -
Rops8g02647 1633 MobiDBLite consensus disorder prediction 9 70 - -
Rops8g02647 1633 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 9 1499 IPR017072 GO:0032968
Rops8g02647 1633 FunFam Transcription elongation factor spt6 485 746 - -
Rops8g02647 1633 CDD SH2_Cterm_SPT6_like 1346 1432 IPR035018 -
Rops8g02647 1633 Pfam HHH domain 1012 1099 IPR041692 -
Rops8g02647 1633 MobiDBLite consensus disorder prediction 71 91 - -
Rops8g02647 1633 FunFam Transcription elongation factor spt6 1345 1437 - -
Rops8g02647 1633 ProSiteProfiles S1 domain profile. 1125 1196 IPR003029 GO:0003676
Rops8g02647 1633 Gene3D SH2 domain 1233 1344 IPR036860 -
Rops8g02647 1633 SUPERFAMILY RuvA domain 2-like 908 998 IPR010994 -
Rops8g02647 1633 SMART S1_6 1123 1196 IPR022967 -
Rops8g02647 1633 FunFam Transcription elongation factor spt6 1118 1206 - -
Rops8g02647 1633 MobiDBLite consensus disorder prediction 1454 1633 - -
Rops8g02647 1633 SMART rnase_8s 737 855 IPR006641 GO:0006139
Rops8g02647 1633 FunFam Transcription elongation factor spt6 1233 1344 - -
Rops8g02647 1633 MobiDBLite consensus disorder prediction 111 224 - -
Rops8g02647 1633 MobiDBLite consensus disorder prediction 162 196 - -
Rops8g02647 1633 Gene3D - 292 493 IPR023319 -
Rops8g02647 1633 SUPERFAMILY Tex N-terminal region-like 333 716 - -
Rops8g02647 1633 SUPERFAMILY SH2 domain 1250 1336 IPR036860 -
Rops8g02647 1633 SUPERFAMILY Ribonuclease H-like 737 892 IPR012337 -
Rops8g02647 1633 PIRSF Spt6 3 1501 IPR017072 GO:0032968
Rops8g02647 1633 SUPERFAMILY RuvA domain 2-like 1011 1100 IPR010994 -
Rops8g02647 1633 FunFam Transcription elongation factor spt6 727 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02647 Rops-Chr8 60121107 60131030 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02647 K11292 - gmx:100808591 2702.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02647 8 60121107 60131030 Rops8g02647 8 60121107 60131030 ECH