Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02576 ATGGCCACCGTCTTCAGAACCCCCACCTTCCGGCCACCGCCTCAGCCGCGCACCTCCTACTCTCCCAAGCCCTCAAACGTCGTCGTCGCACAAAGCACTAGCCGCAGGAGGATGAGGCCCTCACCCCTTACCTCTCTCCGGTTCCCTACCATTCCCTCCCTCCGGTTCGTCAAGTTCGTTCCTTTTGCTTTTGATGGGGACACCGAGGCCCCACAAGTTCAAGAGCCACAGGTTCAGGTTCTGGACTCTTCAGATGGTGCTGTTGGTGGGGAGGATAGTGCAGGTGATAATGAGTTTACTGTTGCTGGTGAACCATCTGCTTCACCTTTGCTAGTATTACTGCAATCTTACAAAGAAGCATTAGCTAATAATGACGAAGTCAAAGTTGCTGAGTTGGAATCATCATTAAAATCCATCGAAGATGAGAAAGTAGGTCTCGCAGGCAAAATAGCTTCTTTATCTGAAGAGTTATCAATAGAAAAAGAAAGGATTCTAAGGATTAGCGCGGACTTTGACAATTTCCGGAAGAGGACTGAGAGAGACCGCCTTTCACTGGTCACAAATGCTCAGGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCAAAAACACAGATTAAGGTGGAGACAGAGGCAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAACAGTTCATTGAAATTCTAACCTCACTTGGAGTTGAAGCGGTGGAGACAGTTGGAAAACCCTTTGATCCATTGCTACATGAAGCAATTATGCAAGAGGATTCTGCTGAATTTGAGGATGGCATCATAATTCAAGAGTTCAGAAAGGGTTTTAAACTTGGTGACCGCCTCTTACGTCCATCAATGGTGAAGGTATCAGCTGGTCCTGGGCCTGCAAAGCCTGAACAAGAAGCACCGCAAGAACAAGTCACAAGTGAAGTTTCTGAAGGCAATAAAGAGAATGAGGGCAGCACAGAAACAGAGTCTGCTTGA 999 0.4665 MATVFRTPTFRPPPQPRTSYSPKPSNVVVAQSTSRRRMRPSPLTSLRFPTIPSLRFVKFVPFAFDGDTEAPQVQEPQVQVLDSSDGAVGGEDSAGDNEFTVAGEPSASPLLVLLQSYKEALANNDEVKVAELESSLKSIEDEKVGLAGKIASLSEELSIEKERILRISADFDNFRKRTERDRLSLVTNAQGEVVESLLPVLDNFERAKTQIKVETEAEEKINNSYQSIYKQFIEILTSLGVEAVETVGKPFDPLLHEAIMQEDSAEFEDGIIIQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEAPQEQVTSEVSEGNKENEGSTETESA* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02576 332 CDD GrpE 161 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops8g02576 332 MobiDBLite consensus disorder prediction 1 42 - -
Rops8g02576 332 Hamap Protein GrpE [grpE]. 91 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops8g02576 332 MobiDBLite consensus disorder prediction 21 40 - -
Rops8g02576 332 MobiDBLite consensus disorder prediction 292 332 - -
Rops8g02576 332 Gene3D - 121 238 IPR013805 -
Rops8g02576 332 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 146 240 IPR013805 -
Rops8g02576 332 PANTHER GRPE PROTEIN 96 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops8g02576 332 Gene3D Head domain of nucleotide exchange factor GrpE 240 295 IPR009012 GO:0006457
Rops8g02576 332 Coils Coil 122 156 - -
Rops8g02576 332 Pfam GrpE 136 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops8g02576 332 ProSitePatterns grpE protein signature. 251 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops8g02576 332 FunFam Protein GrpE 240 295 - -
Rops8g02576 332 FunFam GrpE protein homolog 122 238 - -
Rops8g02576 332 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 241 297 IPR009012 GO:0006457
Rops8g02576 332 PRINTS GrpE protein signature 193 208 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops8g02576 332 PRINTS GrpE protein signature 275 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops8g02576 332 PRINTS GrpE protein signature 165 181 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops8g02576 332 PRINTS GrpE protein signature 248 263 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02576 Rops-Chr8 58870806 58875586 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02576 K03687 - gmx:100820521 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02576 8 58870806 58875586 Rops8g02576 8 58870806 58875586 ECH