Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02574 ATGGAGTCAAGCGTTTTGGAATGCATCGGCGTTGAAATAATCGGCGTTATGTCTCCGGTTTCAATCTGCATGTTCCTCGTGGTCCTCCTCGTTTACTCCGTCTCATCGCCGTCATCCTCTCCCGAAGATGCAATCCGAACCGCCGCCAACCTCGTCTACGTCGAAAACCCTTCCGACACGACGGCGCAGAAACTCGAAGGCGCACTCCTAAACGCCGTCGTTTTCGTCATCGTCATAGCACTCGTCACATTCCTCCTCGTCCTCCTCTACTACTACAACTGCACCACCTTCCTCCGCCACTACGTTCGCTTCTCCGCCTTCTTCGTCCTCGGTTCTATGGGCGGATCCATTTTCCTTTCACTCATTCAACGCTTCTCACTCCCTCTCGATTCCATCACGTGCTTTATTCTCCTTTTCAATTTCACCGTCGTCGGAGTCCTCTCCGTCTTCGCCGTCGCTGTTCCGATTTTGATCCGACAGTGTTACATGGTTTGTCTTGGTATAATTGTTGCTGCTTGGTTCACCCAACTCCCTGAATGGACCACGTGGACGTTGTTGGTGGCTCTCGCAGTTTACGATCTCGTCGCCGTTTTAGCCCCCGGTGGTCCCTTGAAGCTTCTTGTTGAATTGGCCTCTAGCCGGAATGAGGAGCTTCCGGCGTTAGTCTACGAGGCTCGCCCTACGGTGACCGGAAACCACCGTGGAGGTTCTACGTTAGGGCTGTTGGTCACCGCCGGGGTTTCGGAGTCGGAACCTTCGTCAATTGAGCTTCAGGTGGTGTCTAATGAGAATGAGGGTGAGATTCAAGGTGGTGACTCTGTTAGGGTTAGGGATTTTGGAAATCAGAGGATGGAGAATGACGAGGAAGGAGAAAGATCTCCTTTGGTTGCGAATCGAGTTTCGAGCATGGATTCATCAATGCAATTTGATGGGAGAAGAGAGGGTGAGGTTGTTGTTGTTGATGAGGAAATGTCTCCACTTGTTGAGATGATTGGGATTGGGAACAATGAAAGACAACAAATGATGAGAAGGGATGATGGTGAGGAGAGGGGAATTAAGCTTGGACTTGGTGACTTTGTTTTCTACAGTGTTCTTGTGGGTAGAGCTGCAATGTATGATCTCATGACAGTTTATGCTTGTTACCTTGCCATTATATCAGGATTAGGGTGCACTCTTATTTTGTTGTCAGTGTGCCACCGAGCTCTGCCTGCACTACCAATTTCGATCACATTGGGTGTTCTTTTCTATTTTTTGACTAGATTGTTAATGGAACCCTTCATTGTTGGGATGTCAACAAATTTAATGATGTTTTGA 1314 0.4878 MESSVLECIGVEIIGVMSPVSICMFLVVLLVYSVSSPSSSPEDAIRTAANLVYVENPSDTTAQKLEGALLNAVVFVIVIALVTFLLVLLYYYNCTTFLRHYVRFSAFFVLGSMGGSIFLSLIQRFSLPLDSITCFILLFNFTVVGVLSVFAVAVPILIRQCYMVCLGIIVAAWFTQLPEWTTWTLLVALAVYDLVAVLAPGGPLKLLVELASSRNEELPALVYEARPTVTGNHRGGSTLGLLVTAGVSESEPSSIELQVVSNENEGEIQGGDSVRVRDFGNQRMENDEEGERSPLVANRVSSMDSSMQFDGRREGEVVVVDEEMSPLVEMIGIGNNERQQMMRRDDGEERGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCHRALPALPISITLGVLFYFLTRLLMEPFIVGMSTNLMMF* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02574 437 PANTHER PRESENILIN 2 437 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops8g02574 437 Gene3D Presenilin 332 428 IPR042524 -
Rops8g02574 437 SMART psh_8 66 423 IPR006639 GO:0004190|GO:0016020
Rops8g02574 437 Pfam Presenilin 11 427 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops8g02574 437 PRINTS Presenilin family signature 193 210 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops8g02574 437 PRINTS Presenilin family signature 176 183 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops8g02574 437 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops8g02574 437 FunFam Presenilin 332 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02574 Rops-Chr8 58849843 58851484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02574 1 437 Miscellaneous Gene Families AT1G08700 66.083 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02574 K04505 - fve:101311895 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02574 8 58849843 58851484 Rops8g02574 8 58849843 58851484 ECH