Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02565 ATGATGATGCTAACATCACCTTCTTCTTCTTCTTCTTCATGTTTTTCTCTTCCTCGTCCTTTTATCATTCAAACCCAACGCCACCATATCCTTAGCCTCAAACCCTACACTCGTTCTCGGCACACACTTGCCGTGGCTAGTGCTTCCACTACCACTCCGTCACTGTACTCTACCAGAGACGCTGTTAACATTGCCGACGATGTCACTCAGTTGATTGGGAATACACCAATGGTATACTTGAATAAAGTTACAGAAGGCTGTGTGGCAAACGTTGCTGCAAAACTTGAGTCTATGGAGCCTTGTCGAAGTGTGAAGGACAGAATTGGATATAGCATGTTAGCTGATGCCGAAGAGAATGGAGCAATTTCTCCAGGGAAGACTGTTTTAGTTGAACCAACAACTGGAAATACAGGACTTGGTATTGCTTTCATTGCAGCAACGAAAGGGTACAAACTTATAGTCACAATGCCTGCTTCAGTTAATATTGAGAGGAGAGTCCTTTTACGTGCATTTGGTGCAGAGGTTGTTCTGACTGATGCAGAGAAGGGGCTGAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCAAGGCACTCCAAATGCTTACATGTTTCGACAGTTTGATAACATGACTAATACAAAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACCATGGGTAATGTTGATGCACTGGTTGCTACAATTGGAACTGGTGGCACTGTCACAGGCACTGGACGGTATCTGAAAATGATGAACAAAAAAATAAAGGTGGTTGGGGTGGAACCTGCAGACAGAAGTGTAATCTCAGGGGACAATCCAGGTTTCATGCCAAGCATTTTGGATGTCAAACTGCTTGATGAGGTTATCAAGGTTACCAATGTTGAAGCTGTTGAAATGGCAAGGAGATTAGCATTGGAAGAAGGTTTGCTGGTTGGGATTTCCTCTGGAGCTGCATCAGCTGCTGCCATAAGTTTAGCAAGACGGCCTGAGAATTCTGGAAAACTTATTGTGGTTATTTTTCCTAGTTTTGGTGAGAGGTATATGTCCACTGCCCTCTTCCATTCTATCTATGAAGAGGTTCAGAAAATCTGCCATATGCTTCACATAGATTCATCATTTGGAGAAGGCACAGTTCTTGGAGCTGAAAGTCAGACAGGATGTGAAAGGGACTAA 1185 0.4363 MMMLTSPSSSSSSCFSLPRPFIIQTQRHHILSLKPYTRSRHTLAVASASTTTPSLYSTRDAVNIADDVTQLIGNTPMVYLNKVTEGCVANVAAKLESMEPCRSVKDRIGYSMLADAEENGAISPGKTVLVEPTTGNTGLGIAFIAATKGYKLIVTMPASVNIERRVLLRAFGAEVVLTDAEKGLKGAVDKAEEIVQGTPNAYMFRQFDNMTNTKIHFETTGPEIWEDTMGNVDALVATIGTGGTVTGTGRYLKMMNKKIKVVGVEPADRSVISGDNPGFMPSILDVKLLDEVIKVTNVEAVEMARRLALEEGLLVGISSGAASAAAISLARRPENSGKLIVVIFPSFGERYMSTALFHSIYEEVQKICHMLHIDSSFGEGTVLGAESQTGCERD* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02565 394 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 94 112 IPR001216 GO:0006535
Rops8g02565 394 PANTHER CYSTATHIONINE BETA-SYNTHASE 64 363 - -
Rops8g02565 394 FunFam Cysteine synthase 188 353 - -
Rops8g02565 394 FunFam Cysteine synthase 99 178 - -
Rops8g02565 394 Gene3D - 70 353 IPR036052 -
Rops8g02565 394 NCBIfam cysteine synthase A 69 357 IPR005859 GO:0004124|GO:0006535
Rops8g02565 394 CDD CBS_like 73 353 - -
Rops8g02565 394 NCBIfam cysteine synthase 69 357 IPR005856 GO:0004124|GO:0006535
Rops8g02565 394 Gene3D - 106 208 IPR036052 -
Rops8g02565 394 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 63 363 IPR036052 -
Rops8g02565 394 Pfam Pyridoxal-phosphate dependent enzyme 68 345 IPR001926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02565 Rops-Chr8 58757480 58761943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02565 60 369 Miscellaneous Gene Families AT3G03630 79.032 1.99e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02565 K22846 - gmx:100819100 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02565 8 58757480 58761943 Rops8g02565 8 58757480 58761943 ECH