Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02541 ATGCTAACATGTCCTAGCAGCACCTTCCATGGCCGCGCCACACTGCACCGCCATTCCCAACCCTCTCACTTCCTCCTCTCCAAGCCTCTCCTCTTCCCTCCTCGGTCTCGCTTCTCCGCTTCACGGAAATGCGAGTTCCGTTCTCTGTTTTCCAGCAAGAACGGTCTCGGCTTCGGTGTCAGAGCTTCGGCGGATTCGTCGGAGGTTTCAGAGTCTGCCGTCGATGTTGGTGGCCTGCACATTGCGCCGCAACCGTATTCCGTGAAGATTCCCGTTGGTGATAGACACATTTTGGTTGAGACTGGTCATATCGGAAGACAAGCAAGTGGTTCTGTTACAGTTACAGATGGAGAGACTATTGTGTACACTACTGTTTGTTTGGATGATGTTCCTAGTGAGCCATCTGATTTTTTTCCTCTCTCTGTGAATTATCAAGAGCGTTTCTCAGCAGCTGGTCGCACTAGTGGAGGGTTTTTTAAACGAGAAGGAAAGGCGAAGGATCACGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTGCGTCCTATTATGCCCAAGGGCTTCTACTATGAAACTCAAATATTATCTTGGGTTTTAAGCTATGATGGATTGCACTCCCCTGATTCCTTGGCTGTCACTGCAGCTGGTATAGCAGTTGCACTTTCAGAAGTGCCTATGTCAAAAGCAGTTGCCGGAGTTCGAATTGGTCTTGTTGGTGATAAATATATAGTAAATCCTACAACTGAGGAGATGGAAAACTCCGAGTTGGACCTCTTGCTGGCTGGTACAGATAGTGCAATATTGATGATAGAGGGTTATAGCAATTTTCTTCCAGAAGAGAAGTTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCTTTGGTAAAGAAATGTGGGAAAACAAAAATGTTCGATGCCATCAAGTTGCCTCCTCGTGAGCTTTATAAACATGTTGAAGAAATTGCTGGTGATGAGTTGGTAAAAGCTCTTCAAATTGAAAACAAAATACCAAGAAGGAAAGCCCTTTCATCATTAGAAGAAAGGGTTGTTAAGATACTCACGGAGAATGGTTTTGTCACAAAGGATGCAACACAAAGAAATAATACTGAAACAATTGCGGAGATTCTTGAAGATGAGGATGAAGATGAGGAAGTAATTGTTGATGGAGAAGTTGATGAAGGTGATATTCATATAAAGCTAACTCCACGCAAACCAACCCCTTTGTTTTCTGAGGTAGATGTGAAGTTGGTATTTAAAGAAGTTACCTCCAAGTTTTTGAGGAAGCGCATAGTAGAGGGGGGTAAAAGGAGCGATGGGCGAACACCAAATGAAATACGTCCCATTAACTCGAGATGTGGCCTATTACCTAGAGCACATGGAAGTGCTCTTTTTACAAGAGGCGAGACACAGTCACTAGCTGTTGTTACGCTTGGAGACAAGTATATGGCTCAAAAAATAGACAATCTTATAGGTGTTGATGAATTCAAGAGGTTCTATTTGCAGTATTCATTTCCTCCTTCATGTGTTGGGGAAGTTGGCCGGATTGGTGCACCGAGTAGAAGAGAAATTGGTCATGGGATGCTTGCTGAGAGATCTCTTGAACCAATTTTGCCTTCTGGAAATGATTTCCCTTACACTATTCGTGTTGAAAGTACTATCACAGAAAGCAACGGCTCTTCAAGTATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTCCCTGTTAAGTGCTCAATTGCTGGGATTGCGATGGGTATGGTACTTGACACCAAGGAATTTGGTGGAGATGGAACTCCACTTATTCTGTCTGACATAACTGGATCTGAAGATGCATCTGGAGATATGGATTTTAAGGTCGCTGGAAATGAAGATGGCATAACTGCATTTCAAATGGACATTAAGGTAGGTGGAATCACTTTGCCCATCATGAGAGAGGCACTCCTACAAGCAAGAGATGGCAGGAAGCATATACTTGGAGCGATGATGAATTGCTCGCCCCCTCCAGCAAAAAGGCTTTCCAAGTATGCTCCTTTGATTCACATTATGAAGGTCAAACCCGAGAAAATAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATTATTGAGGAATCTGGAATAGAGGCTATCGATACAGAAGATAATGGCACTGTGAAAATATTTGCTAAAGATTTGTCTAGTTTAGAGAGGTCTAAAGCTATCATTAGTAATTTGACAATGGTTCCAACTATTGGTGATATATATAGGAACTGTGAAATCAAATCAATAGCTCCATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTTTGCCATATCAGTGAACTGAGTTCAGGTTGGCTACCCAAGGCAGAAGATGTTTTCAAAGTGGGAGATCGCATTGATGTTAAGCTTATAGAGATAAATGACAAGGGACAGCTGCGTCTTAGTCACCGAGCACTGCTTCCTGATACAGATCCAGACAATTCAAATTCAAATCTTGCACAGCCTACTGGCAAACTCAATGAAGATACAGAAGCTTCACAAAAATCAACTGATAAGGGTTCATTGAAAAAAGTTACAAAAGATGGTTTAGCTGAAGAGAAGATTGAGCAGCCTAAGGATAAGATTAACACTCCCAAAGGCACAGCCTCATCTAAAAGGAGTTCAGAGGACGATTCTGTACTTCCATCAAAAAAGTTTATCAAGAGATTGGTCAGCCCTTCCCAGGATAAGCCTGTCGCTAACAAAGACAAAATAAAGAAGAGTAGCAACAAAGCAGCCGGTAGTGTCTCTGACAAAGATGAAAGTAGTTTGGTTAGTGGAGAGGCATAA 2865 0.4269 MLTCPSSTFHGRATLHRHSQPSHFLLSKPLLFPPRSRFSASRKCEFRSLFSSKNGLGFGVRASADSSEVSESAVDVGGLHIAPQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKAKDHEVLICRLIDRPLRPIMPKGFYYETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPMSKAVAGVRIGLVGDKYIVNPTTEEMENSELDLLLAGTDSAILMIEGYSNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKTKMFDAIKLPPRELYKHVEEIAGDELVKALQIENKIPRRKALSSLEERVVKILTENGFVTKDATQRNNTETIAEILEDEDEDEEVIVDGEVDEGDIHIKLTPRKPTPLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPNEIRPINSRCGLLPRAHGSALFTRGETQSLAVVTLGDKYMAQKIDNLIGVDEFKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLEPILPSGNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPVKCSIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMREALLQARDGRKHILGAMMNCSPPPAKRLSKYAPLIHIMKVKPEKINLIIGSGGKKVKSIIEESGIEAIDTEDNGTVKIFAKDLSSLERSKAIISNLTMVPTIGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEINDKGQLRLSHRALLPDTDPDNSNSNLAQPTGKLNEDTEASQKSTDKGSLKKVTKDGLAEEKIEQPKDKINTPKGTASSKRSSEDDSVLPSKKFIKRLVSPSQDKPVANKDKIKKSSNKAAGSVSDKDESSLVSGEA* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02541 954 NCBIfam polyribonucleotide nucleotidyltransferase 420 830 IPR012162 GO:0003723|GO:0004654|GO:0006402
Rops8g02541 954 Gene3D - 760 831 IPR012340 -
Rops8g02541 954 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 84 832 IPR012162 GO:0003723|GO:0004654|GO:0006402
Rops8g02541 954 FunFam Polyribonucleotide nucleotidyltransferase 391 686 - -
Rops8g02541 954 Pfam 3' exoribonuclease family, domain 2 229 291 IPR015847 -
Rops8g02541 954 Pfam S1 RNA binding domain 767 829 IPR003029 GO:0003676
Rops8g02541 954 CDD S1_PNPase 760 828 - -
Rops8g02541 954 SUPERFAMILY Ribonuclease PH domain 2-like 227 312 IPR036345 -
Rops8g02541 954 FunFam Polyribonucleotide nucleotidyltransferase 687 756 - -
Rops8g02541 954 FunFam Polyribonucleotide nucleotidyltransferase 1, chloroplastic 760 831 - -
Rops8g02541 954 Gene3D - 79 311 IPR027408 -
Rops8g02541 954 Gene3D K Homology domain, type 1 687 759 IPR036612 GO:0003723
Rops8g02541 954 Gene3D - 399 686 IPR027408 -
Rops8g02541 954 MobiDBLite consensus disorder prediction 830 954 - -
Rops8g02541 954 CDD KH-I_PNPase 688 757 - -
Rops8g02541 954 MobiDBLite consensus disorder prediction 935 954 - -
Rops8g02541 954 SUPERFAMILY Ribosomal protein S5 domain 2-like 427 599 IPR020568 -
Rops8g02541 954 SMART kh_6 689 754 IPR004087 GO:0003676
Rops8g02541 954 MobiDBLite consensus disorder prediction 856 886 - -
Rops8g02541 954 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 685 754 IPR036612 GO:0003723
Rops8g02541 954 SMART S1_6 758 829 IPR022967 -
Rops8g02541 954 MobiDBLite consensus disorder prediction 834 855 - -
Rops8g02541 954 ProSiteProfiles Type-1 KH domain profile. 690 750 - -
Rops8g02541 954 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 77 876 IPR012162 GO:0003723|GO:0004654|GO:0006402
Rops8g02541 954 CDD RNase_PH_PNPase_1 86 312 - -
Rops8g02541 954 SUPERFAMILY Ribosomal protein S5 domain 2-like 87 225 IPR020568 -
Rops8g02541 954 FunFam Polyribonucleotide nucleotidyltransferase 84 314 - -
Rops8g02541 954 ProSiteProfiles S1 domain profile. 760 829 IPR003029 GO:0003676
Rops8g02541 954 Pfam 3' exoribonuclease family, domain 1 453 587 IPR001247 -
Rops8g02541 954 Pfam 3' exoribonuclease family, domain 1 95 225 IPR001247 -
Rops8g02541 954 SUPERFAMILY Nucleic acid-binding proteins 755 834 IPR012340 -
Rops8g02541 954 CDD RNase_PH_PNPase_2 453 681 - -
Rops8g02541 954 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 308 456 IPR036456 GO:0003723|GO:0006396
Rops8g02541 954 SUPERFAMILY Ribonuclease PH domain 2-like 581 685 IPR036345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02541 Rops-Chr8 58160870 58200384 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02541 K00962 - gmx:100785430 1427.54