Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02539 ATGAGACACAAAACCCCACGTTGGCAATTTAAAACAATTAACTCAACCAACCGCAGGTCTCAATCACAAGAGGGTTCCTGGGGTTCCTTGAGGTTTTTAACTAGGAGGAAGCAGGTTGATTCTGCATGTAGAAACACTGAGGCTCTGCTTGCCAAGGAGTTAACTGTTCCTCATCTCATTGCACTTGGTGTTGGTTCAACAATTGGGGCTGGAGTGTATGTATTGGTTGGAACAGTTGCTAGAGAGCATGCTGGACCTTCTTTGGCACTTTCATTTCTGATAGCTGGATTAGCTGCTGGTCTCTCTGCCTTTTGCTATGCAGAGCTTGCTTCTCGCTGCCCTTCTGCTGGTAGTGCTTATCACTATTCATACATATGTCTTGGAGAAGGTGTTGCTTGGTTGATCGGATGGGCATTGATCTTGGAATATACAATTAGTGGTGCTGCTGTTGCTCGAGGCATTACCCCCAATTTGGCTTCACTTTGTGGTGGCGTGGACAATTTACCCATCTTTTTGTCACGCCAACGTATCCCTGGGATTGATATTGATGTGGACCCATGTGCAGCAATTTTGGTGTTATTTTTTACCGGACTCCTTTGTGTGGGGATCAAAGAGAGTACAATGGTACAAGGCATAGTCACATTAGTGAATGTATGTGCATTGCTTTTCGTCATAGTAGCTGGTGGTTACTTGGGATTCAAGTCAGGATGGGTTGGATATGAACTTCCTACTGGGTTTTTCCCCTTTGGGGTTGATGGGATGCTTGCTGGTTCTGCAACTGTCTTCTTTGCATACATAGGTTTTGACACAGTTGCCAGCACCGCTGAAGAGGTGAAAAATCCTCAACGAGATTTGCCCCTAGGTATTAGTGGTGTGTTATTTCTTTGTAGTGGGATGTATATGATGGTCTCCATTGTTTTGGTTGGTATAGTACCTTATTATGCTATTGATCCGGATACCCCCATATCCTCTGCATTTGCTGACCATGGGATGCAATGGGCAGCTTACATTATAAATGTTGGAGCTTTCACAGCTCTTTGTTCAACATTGATGGGTTCGATACTTCCCCAGCCACGAATTTTAATGGCTATGGCAAGGGATGGGCTACTGCCACCATTTTTTTCTGACATAAATAAGCACAGTCAGGTTCCTGTTAAGGGCACAATAACTTCTGGCCTTGTGGCTGCAGTTATGGCGTTTTTTATGGAAGTCTCCGAACTGGCAGGGATGGTTAGTGTGGGTACGCTTTTAGCATTCACCATGGTGGCACTATCTTTGTTGATACTAAGATATATCCCTCCAAATGATGTTCCATTGCCTCCTTCACTCCAGGATTCAATTGCTGAGACCAATGTGGAATTTGCAGAGGCAAATGTTGATACTTCTGAGGACACAGAACCTTTAGTAGTTAGACATCTTGCCATAGGAAATTGTCTGAATGAGGGTAATAGGCGAAAAGTTATTGGGTGGATCATAGCATTCACATGCTTAGGGGCGTTTGTCCTCACATATGCTGCTTCATATTTAACTCTTGTTAGTTCTGTTCGCTTTGCATTATGTGGAGTTGGTGGTATTCTTCTTGTAGCTGGTCTTGTCTTCCTAACCTGTGTAGATCAAGATGATGCAAGGCACAACTTTGGGCATTCTGGAGGTTTCATATGCCCATTTGTGCCACTACTGCCCATAGCTTGCATTCTCATTAATACCTACCTGCTTATTAATCTTGGAGAGGCTACATGGTTTCGTGTTTCTATATGGCTTGCAACAGGACTACTAGTTTATGTGTTTTATGGCCGAACCCATAGCTCTCTAAAAGATGCAATTTACGTGCCAACAAGGCAAGTGGATGAAACTTATCAAACTTCCAGAACCAGTCTTGCTTAG 1884 0.4374 MRHKTPRWQFKTINSTNRRSQSQEGSWGSLRFLTRRKQVDSACRNTEALLAKELTVPHLIALGVGSTIGAGVYVLVGTVAREHAGPSLALSFLIAGLAAGLSAFCYAELASRCPSAGSAYHYSYICLGEGVAWLIGWALILEYTISGAAVARGITPNLASLCGGVDNLPIFLSRQRIPGIDIDVDPCAAILVLFFTGLLCVGIKESTMVQGIVTLVNVCALLFVIVAGGYLGFKSGWVGYELPTGFFPFGVDGMLAGSATVFFAYIGFDTVASTAEEVKNPQRDLPLGISGVLFLCSGMYMMVSIVLVGIVPYYAIDPDTPISSAFADHGMQWAAYIINVGAFTALCSTLMGSILPQPRILMAMARDGLLPPFFSDINKHSQVPVKGTITSGLVAAVMAFFMEVSELAGMVSVGTLLAFTMVALSLLILRYIPPNDVPLPPSLQDSIAETNVEFAEANVDTSEDTEPLVVRHLAIGNCLNEGNRRKVIGWIIAFTCLGAFVLTYAASYLTLVSSVRFALCGVGGILLVAGLVFLTCVDQDDARHNFGHSGGFICPFVPLLPIACILINTYLLINLGEATWFRVSIWLATGLLVYVFYGRTHSSLKDAIYVPTRQVDETYQTSRTSLA* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02539 627 PIRSF AA_transporter 473 615 - -
Rops8g02539 627 PIRSF AA_transporter 31 438 - -
Rops8g02539 627 Pfam Amino acid permease 58 435 IPR002293 GO:0016020|GO:0022857|GO:0055085
Rops8g02539 627 FunFam probable cationic amino acid transporter 50 442 - -
Rops8g02539 627 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 33 603 - -
Rops8g02539 627 Pfam C-terminus of AA_permease 552 602 IPR029485 -
Rops8g02539 627 Gene3D Amino acid/polyamine transporter I 471 616 - -
Rops8g02539 627 Gene3D Amino acid/polyamine transporter I 50 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02539 Rops-Chr8 58131004 58138891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02539 28 627 Organic Solute Cotransporters AT5G36940 67.705 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02539 K13863 - gmx:100784895 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02539 8 58131004 58138891 Rops8g02539 8 58131004 58138891 ECH