Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02528 ATGAGCAACAACGAAGCCATTGATGGCGTCGATCATCATCTTGCTGAGCTTTACAGTTCCATGCAAAGCATTCCCTCCAACGAGGACTTCCACTTTTACTACAACTTCGCCGAATTCAAACGCCCGATTGAAGAAATCGCAAGGAAGTCACAGTCAATGCTGAATAAAATCGGTTCCTCGGAGCATATATGGGGCAGAGGTTCGGTTTTTCCCGGCGACATCGACGATGCTTATGAATGGCTCGTGAATGCGAACGACGACGTTTTGGAGCTGGTTGATGAGTTGGTGGATGAATTTATGAGGGTTAAGAAGGAGGAATTGGAAAATGAGTTTGAGAAGAAGAAAGGGGTGGGTCATTTGGGTAATGAAACTGGTTTGAAGGATAAGAAGGGTAAAGTGTCGTTTCATATACCGACACTTAGGAAGCCACAGTATCAATACAATATTGTGGTTAATAATGCAAACCAGCCTTTTCAGCATGTTTTGTTGCAGAAGAGTGATGATGGCCAGAGGTTTATTCATCCACTGGAGAATCTCTCTGTTTTGGATTTTGTCGATGAAGAAAATCTTGCGAATCTTGTACCAATAAAGCCTCCCTCAATAGAATGCACCCCTTTCAAGCTTGTGGAGGAAGTCAAAGGATTGGAGGAGTTGGCTGCTAAGCTACATTCTGTTAATGAATTTGCGGTGGATTTGGAACATAATCAATATCGGTCTTTCCAAGGTTTGACGTGTTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTTGTAGATACTCTGAAGCTCCTCGATCACGTTGGGCCATACCTGAGGGAAGTCTTTAAGGACCCTACCAAGAAAAAGGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATCTATGTTTCTAATTTGTTTGATACTGGCCAGGCTTCAAGAGTGTTAAAATTGGAGAGATATAGTTTGCAATATCTTTTGCAACACTTTTGTGGGGTTACTGCAAACAAAGAATACCAGAATGCAGATTGGAGAATACGCCCCCTTCCTGATGTGATGCTAAGATATGGCAGAGAAGATACACACTATCTGCTTTATGTATATGATTTAATGAGGATCAAGTTATTTGCACTGTCTAAGGAGTCTGAAACTGATAATCCTCTGTTGGAGGTTTACAAGCGCAGTTACAATGTCTGCATGCAGCTATATGAGAAAGAGCTTTTGACAGAAAACTCGTACCTTCATATAAAAGGGTTGCAAGGGGCTGGTTTTAATGCTCAGCAGCTTGCCATTGTTTCAGGGCTCTGTGAATGGCGAGATATTCTTGCTCGTGCAGAGGATGAGAGTACCGGGTATATATTGCCAAACAAAATTATTCTTGAAATTGCTAAGCATATGCCTGTCATTACAAGCAATCTACGGCGATTGGTAGCAAAGTCAAAGCTCCCATATGTTGACTGCAGTCTTGACATCATTGTCAACATTGTCAGACATTCCATACAAAATGCTGCTGCCTTTGAAGAAGCTGCCTTACGTTTGAAAGAAGAACATGCAGCACGTTTGTCAAATGTAGCACCTGTTAAGGATGGAACTGAAAATCCCACCAGTGTTAATATCTCAGAGAATTCCCTGTTTTCTTCTGACCTGAAGGAGGAATGTTTTCAGCATGAAGATAAAGATGGACAAGAAAAAATTAAATCCAATGGTCTTACTTCAGAGCCCCCAAGCGTCAGTCTCACTATTTTAGAGAAAAATAAGGAGGATGCAAATGTTAGTGCACTCTCTACAGCAAAGGGCAATGGAGCAAATGTTCAGGTGCTAAAAATGCCTGCTGGTGCTTTAGATGCCACACTGCTGGGCAATTCAGCTTCAGAATTGAAGCTTGATCCTGACCAAAAGGGCAAGGATGAGATCAAGCTAGAACAGAGTAGATCGATAGTCAATCTTCCTTCCCATTCATTTTTGGGCAACAGTGAGAATTCAAAACCAGTTGTAGAAAGTGTAGTAACGATAGACTCGGATTCAGAGTTGGATGATATGGTGAAGAATAACCTGTAA 2055 0.4195 MSNNEAIDGVDHHLAELYSSMQSIPSNEDFHFYYNFAEFKRPIEEIARKSQSMLNKIGSSEHIWGRGSVFPGDIDDAYEWLVNANDDVLELVDELVDEFMRVKKEELENEFEKKKGVGHLGNETGLKDKKGKVSFHIPTLRKPQYQYNIVVNNANQPFQHVLLQKSDDGQRFIHPLENLSVLDFVDEENLANLVPIKPPSIECTPFKLVEEVKGLEELAAKLHSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLLDHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVSNLFDTGQASRVLKLERYSLQYLLQHFCGVTANKEYQNADWRIRPLPDVMLRYGREDTHYLLYVYDLMRIKLFALSKESETDNPLLEVYKRSYNVCMQLYEKELLTENSYLHIKGLQGAGFNAQQLAIVSGLCEWRDILARAEDESTGYILPNKIILEIAKHMPVITSNLRRLVAKSKLPYVDCSLDIIVNIVRHSIQNAAAFEEAALRLKEEHAARLSNVAPVKDGTENPTSVNISENSLFSSDLKEECFQHEDKDGQEKIKSNGLTSEPPSVSLTILEKNKEDANVSALSTAKGNGANVQVLKMPAGALDATLLGNSASELKLDPDQKGKDEIKLEQSRSIVNLPSHSFLGNSENSKPVVESVVTIDSDSELDDMVKNNL* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02528 684 SUPERFAMILY Ribonuclease H-like 141 404 IPR012337 -
Rops8g02528 684 FunFam Putative exosome component 10 411 507 - -
Rops8g02528 684 CDD Rrp6p_like_exo 202 393 - -
Rops8g02528 684 FunFam Protein RRP6-like 2 isoform A 139 409 - -
Rops8g02528 684 ProSiteProfiles HRDC domain profile. 424 505 IPR002121 GO:0003676
Rops8g02528 684 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 10 641 IPR045092 GO:0000175|GO:0000467
Rops8g02528 684 SMART 35exoneu6 206 375 IPR002562 GO:0003676|GO:0006139|GO:0008408
Rops8g02528 684 SMART hrdc7 424 504 IPR002121 GO:0003676
Rops8g02528 684 Pfam HRDC domain 427 475 IPR002121 GO:0003676
Rops8g02528 684 Gene3D - 133 412 IPR036397 GO:0003676
Rops8g02528 684 Pfam PMC2NT (NUC016) domain 22 99 IPR012588 GO:0000176|GO:0006396
Rops8g02528 684 SUPERFAMILY HRDC-like 407 499 IPR010997 GO:0000166|GO:0044237
Rops8g02528 684 Gene3D HRDC domain 413 507 IPR044876 -
Rops8g02528 684 Pfam 3'-5' exonuclease 209 371 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02528 Rops-Chr8 57881105 57894475 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02528 K12591 - gmx:100804872 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02528 8 57881105 57894475 Rops8g02528 8 57881105 57894475 ECH