Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02508 ATGGCTAAAATCTCCATCTTGTTGGTGGAGCTTTGGCTGCTAGGTAGTTTTTGGGCAGGTTTATTGGAGGCAGAATACATGAAGTACAAAGACCCTAAAGAGTCAATTGATGGTAGGGTTGAGGATCTCATTAGCCGAATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAGATTGAGCGCAAGGCTGCATCTCCTCATGTGCTCAAGAAGTATTTTATTGGGAGTGTTATGAGTGAGGGAGGAAGTGTTCCAGCTCCACAGGCCTCTGCTGAAACCTGGATTAACATGTTGAATGAATTTCAGAAGGGAGCTTTATCAACTCGGCTTGGAATTCCAATGTTTTATGGGATTGATGCTGTTCATGGCCACAATACTGTTTATAAAGCAACTATTTTTCCTCATAATATTGGACTTGGAGCTACCAGGGATCCTGAACTAGTTAAGAGAATTGGAGTTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGTTTATGCACCTTGTGTAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGTGAAGATCCTAAAATAGTTCAAGCTATGACTGATATCATATCAGGATTGCAAGGGGACATCCCTGATAACTTACCAAAGGGTGTCCCTTTTATTGCTGGAAAAGAAAAGGTTATAGCTTCTGCTAAGCACTATGTGGGTGATGGTGGAACAGTCAATGGGATTGATGAGAACAACACTGTTATAGATAGAGATGGATTGATGAGAATTCACATGCCAGGCTACTTTAGCTCAATTACCAAAGGTGTGGCAACCATTATGGTCTCGTACTCCAGTTGGAACGGAATAAAAATGCATGCTAACCATGACCTTGTTACTGGCTTCCTCAAGAACACACTCCATTTCAAGGGCTTTGTTATTTCAGATTTTGAGGGTATTGATAGGATCACCTCTCCACCTCATGCAAACTTCACTTATTCAGTTGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGGTTCCAAAGTTCTACACAGAATTCATTGATGATTTAACCACGCTGGTGAAAAATAAGTTCATTCTCATGAGTCGAATTGATGATGCGGTGAAAAGAATTTTGTGGGTTAAGTTCATGATGGGTATTTTTGAGAACCCCTTTGCTGATTACGGTTTGGTCAGATATTTGGGAATTCAGGAACATAGAAGATTGGCTAGGGAAGCTGTAAGGAAATCACTGGTCCTTCTAAAAAATGGTAAATCTGCAGAGAAGCCTTTATTACCTCTTCCAAAAATGGTGCCAAAAATACTTGTGGCTGGAAGCCATGCAGATAATCTAGGATATCAGTGTGGTGGCTGGACCATTGAATGGCAAGGGATCAGTGGCAACGATCTTCTTGAAGGGACTACAATTCTCACTGCTGTAAAAAACACTGTTGATCCAGAGACCACAGTGATCTACAAGGAGAACCCTGATATAGAATTTGTTAAATCCAAAATGGATTTTACTATGCCATAG 1518 0.4117 MAKISILLVELWLLGSFWAGLLEAEYMKYKDPKESIDGRVEDLISRMTLEEKIGQMLQIERKAASPHVLKKYFIGSVMSEGGSVPAPQASAETWINMLNEFQKGALSTRLGIPMFYGIDAVHGHNTVYKATIFPHNIGLGATRDPELVKRIGVATALEVRATGIQYVYAPCVAVCRDPRWGRCYESYSEDPKIVQAMTDIISGLQGDIPDNLPKGVPFIAGKEKVIASAKHYVGDGGTVNGIDENNTVIDRDGLMRIHMPGYFSSITKGVATIMVSYSSWNGIKMHANHDLVTGFLKNTLHFKGFVISDFEGIDRITSPPHANFTYSVEAGVSAGIDMFMVPKFYTEFIDDLTTLVKNKFILMSRIDDAVKRILWVKFMMGIFENPFADYGLVRYLGIQEHRRLAREAVRKSLVLLKNGKSAEKPLLPLPKMVPKILVAGSHADNLGYQCGGWTIEWQGISGNDLLEGTTILTAVKNTVDPETTVIYKENPDIEFVKSKMDFTMP* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02508 505 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 413 492 IPR036881 GO:0004553|GO:0005975
Rops8g02508 505 Gene3D - 22 396 IPR036962 GO:0004553|GO:0005975
Rops8g02508 505 SUPERFAMILY (Trans)glycosidases 26 412 IPR017853 -
Rops8g02508 505 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 22 397 - -
Rops8g02508 505 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 24 502 - -
Rops8g02508 505 Gene3D - 398 503 IPR036881 GO:0004553|GO:0005975
Rops8g02508 505 Pfam Glycosyl hydrolase family 3 N terminal domain 48 374 IPR001764 GO:0004553|GO:0005975
Rops8g02508 505 PRINTS Glycosyl hydrolase family 3 signature 133 152 IPR001764 GO:0004553|GO:0005975
Rops8g02508 505 PRINTS Glycosyl hydrolase family 3 signature 109 125 IPR001764 GO:0004553|GO:0005975
Rops8g02508 505 PRINTS Glycosyl hydrolase family 3 signature 179 195 IPR001764 GO:0004553|GO:0005975
Rops8g02508 505 PRINTS Glycosyl hydrolase family 3 signature 295 313 IPR001764 GO:0004553|GO:0005975
Rops8g02508 505 PRINTS Glycosyl hydrolase family 3 signature 225 241 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02508 Rops-Chr8 57519751 57524405 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02508 27 504 Glycoside Hydrolase AT5G20950 71.190 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02508 K05349 - gmx:100779642 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02508 8 57519751 57524405 Rops8g02508 8 57519751 57524405 ECH