Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02480 ATGGAAGTGGCTCTTCCACTTACTATCTATATTAAAAATATTTTTAATTTCTCATATGAAAGAAGGAGAAAGGGGGCTGCTACTGCAACCAAGCAATTGGTGCAGACGCTCTATAGTGCACAATCTGGACCGCTCCAAGACCGAGTCGCAATCGTCACTGGCTCGTCCCGCGGAATCGGCAAAGAGATCGCGCTTCACCTCGCCTCACTCGGTGCTCGACTCGTCATCAACTACACCTCCAACTCGGACCGAGCTGACTCAGTCGCCGCCCAGATCAACTCGGGCCACGCCACCTCGCGAGCCATCGCCGTGAAAGCTGACGTGTCTGACCCTGACGGTGTGAAGTCGCTGTTCGACTCGGCCGAGCGAGCCTTCGACTCGCCGGTTCAAATCCTGGTCAACTCAGCCGGCGTCCTCGACGACAAGTACCCAACCATAGCCAACACGAACATCGAAAGCTTCGACCGCATTATGAACGTGAATACTAAGGGAGCGTTCCTGTGTGCTAAGGAGGCAGCGAACCGCGTGAAACGTGGCGGCGGAGGGAGGATCATTCTTCTAACGACGTCGTTGGTGGCGGCGCTGAGGCCAGGTTATGGGGCCTACACGGCGTCGAAGGCGGCGGTGGAGGCGATGACAAAGATTCTGGCGAAGGAGCTGAAAGGGACGGGGATCACTGCGAATTGCGTGGCACCGGGTCCTATTGCGACGGAGTTGTTTTTTGAGGGGAAGACGGAGGAGATGGTGAACAGATTGGTGCAAGAAAGCCCCATGTGTAGGCTTGGTGAGACCAAAGATGTTGCTCCTTTTGTGGGGTTCTTGGCTACTGATGCTGCTGAATGGGTCAATGGTCAAATCGTTCGTGTCAACGGTGGCTTTGTTTAG 885 0.5492 MEVALPLTIYIKNIFNFSYERRRKGAATATKQLVQTLYSAQSGPLQDRVAIVTGSSRGIGKEIALHLASLGARLVINYTSNSDRADSVAAQINSGHATSRAIAVKADVSDPDGVKSLFDSAERAFDSPVQILVNSAGVLDDKYPTIANTNIESFDRIMNVNTKGAFLCAKEAANRVKRGGGGRIILLTTSLVAALRPGYGAYTASKAAVEAMTKILAKELKGTGITANCVAPGPIATELFFEGKTEEMVNRLVQESPMCRLGETKDVAPFVGFLATDAAEWVNGQIVRVNGGFV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02480 294 FunFam Short-chain dehydrogenase reductase 36 294 - -
Rops8g02480 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 293 IPR036291 -
Rops8g02480 294 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 40 292 - -
Rops8g02480 294 CDD THN_reductase-like_SDR_c 45 294 - -
Rops8g02480 294 Gene3D - 13 293 - -
Rops8g02480 294 PRINTS Glucose/ribitol dehydrogenase family signature 176 192 IPR002347 -
Rops8g02480 294 PRINTS Glucose/ribitol dehydrogenase family signature 223 240 IPR002347 -
Rops8g02480 294 PRINTS Glucose/ribitol dehydrogenase family signature 257 277 IPR002347 -
Rops8g02480 294 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Rops8g02480 294 PRINTS Glucose/ribitol dehydrogenase family signature 127 138 IPR002347 -
Rops8g02480 294 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Rops8g02480 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Rops8g02480 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 138 IPR002347 -
Rops8g02480 294 Pfam Enoyl-(Acyl carrier protein) reductase 54 293 - -
Rops8g02480 294 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 48 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02480 Rops-Chr8 57104706 57105936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02480 24 293 Acyl Lipid Metabolism Gene Families AT1G24360 30.996 1.09e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02480 K00059 - gmx:100809416 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02480 8 57104706 57105936 Rops8g02480 8 57104706 57105936 ECH