Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02471 ATGACTTTTGTGAGGAAGAAGAGTTTTTGTTGTTTTACTATGGATAAAAATTGGATTTTTAAATGGGTGTTGATGGTGGGGTTGATGGGTTGGTGTGTGGAAGGGCTTGGGGTGAATTGGGGAACACAGGCAACTCATGAGTTGCCTCCTGAAACAGTGGTTCAGATGTTGAAGGACAATGGGATTCAGAAAGTGAAGCTTTTTGATGCTGATGATTCAACCATGAATGCTCTTGCTGGGACTGATATTGAAGTCATGGTTGCTATTCCTAATAACCAGCTTGATGTGATGAATGACTATGACAGGGCTAAACTGTGGGTTAAGAAGAATGTCACACGTTACAACTTCAATGGAGGAGTTAAGATCAAGTATGTAGCAGTTGGGAATGAGCCATTTTTGAAATCCTACAACAATTCATTCTTGAATATTACCCTACCTGCACTACAGAACATTCAAAATGCTCTCAACGAAGCTGGTCATGGAGATCAAATAAAGGCTACGGTGCCCTTAAACGCTGATGTGTATCAGTCTCCAGAGGATAATCCTGTTCCATCTGCAGGAATATTTAGACCTGATATCAGTGGTCTCATGACTGAGATGGTACAATTTCTCAACAAGAATGGCGCACCATTTACCGTGAACATTTACCCCTTCTTGAGTCTTTATGGAAATGATGATTTTCCTTTTAACTATGCCTTCTTTGATGGGGTAGTCAATCCTATAAATGATAATGGTGTTCAATACACCAATGTCTTTGATGCAAATTTTGATACCTTGGTTGCTGCTCTCAAAGCAGTTGGATTTGGGGACCTTCCCATTTTGGTAGGAGAAGTAGGATGGCCTACAGAAGGGGACAAGAATGCCAATGCAGGCAATGCTTTGAGATTCTATAATGGACTTCTGCCAAAGCTTGCATCAAATAAAGGAACCCCGAAACGCCCCGGATTCATTGAAGTTTATCTATTTGGACTCATTGATGAAGATGCCAAGAGCATTGCTCCAGGGAACTTTGAGCGTCACTGGGGAATATTTAGATATGATGGGCAACCCAAGTTTCCAATGGATCTTTCTGGTCAGAATCAAAACAAACTCCTTATAGGTGCACAGGGTGTGAAATATCTTCCTCAAAGGTGGTGCATGTTTAATCCAGATGCTAAGGATCTTAGCAAACTTGCTGATAATATTAATTATGCTTGTACCTTTGGAGATTGCACTGCCCTTGGGTATGGTTCTTCTTGCAACAACTTGGATGCTAATGGGAATGCCTCTTATGCATTTAATATGTACTTCCAAGTGCAGAATCAGGATAGGATGGCATGCAATTTTCAAGGTTTAGCTAAGATCACTACAGACAACATTTCAACACCCACTTGCAATTTTATTATTCAGATAGTTCCTTCTTCTTCCTCTTCTTTGATGCCCTCACTTGTAGCATTGTTATTTGTTATTTTATCCATGATTATGTTCTAG 1470 0.4027 MTFVRKKSFCCFTMDKNWIFKWVLMVGLMGWCVEGLGVNWGTQATHELPPETVVQMLKDNGIQKVKLFDADDSTMNALAGTDIEVMVAIPNNQLDVMNDYDRAKLWVKKNVTRYNFNGGVKIKYVAVGNEPFLKSYNNSFLNITLPALQNIQNALNEAGHGDQIKATVPLNADVYQSPEDNPVPSAGIFRPDISGLMTEMVQFLNKNGAPFTVNIYPFLSLYGNDDFPFNYAFFDGVVNPINDNGVQYTNVFDANFDTLVAALKAVGFGDLPILVGEVGWPTEGDKNANAGNALRFYNGLLPKLASNKGTPKRPGFIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQNQNKLLIGAQGVKYLPQRWCMFNPDAKDLSKLADNINYACTFGDCTALGYGSSCNNLDANGNASYAFNMYFQVQNQDRMACNFQGLAKITTDNISTPTCNFIIQIVPSSSSSLMPSLVALLFVILSMIMF* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02471 489 Gene3D Glycosidases 35 364 - -
Rops8g02471 489 SMART X8_cls 377 460 IPR012946 -
Rops8g02471 489 FunFam Glucan endo-1,3-beta-glucosidase 8 373 469 - -
Rops8g02471 489 Gene3D - 374 471 - -
Rops8g02471 489 SUPERFAMILY (Trans)glycosidases 36 355 IPR017853 -
Rops8g02471 489 FunFam Glucan endo-1,3-beta-glucosidase 5 35 362 - -
Rops8g02471 489 Pfam Glycosyl hydrolases family 17 36 355 IPR000490 GO:0004553|GO:0005975
Rops8g02471 489 Pfam X8 domain 378 446 IPR012946 -
Rops8g02471 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 27 449 IPR044965 GO:0004553|GO:0005975
Rops8g02471 489 ProSitePatterns Glycosyl hydrolases family 17 signature. 271 284 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02471 Rops-Chr8 57008140 57011729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02471 19 489 Miscellaneous Gene Families AT1G64760 74.105 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02471 - - gmx:100815300 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02471 8 57008140 57011729 Rops8g02471 8 57008140 57011729 ECH