Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02438 ATGAAGAAAATGGGTTCTTCTTTGTGGACTGTGTGTCTGGTTTTTGCATCATTGGCCTCTGTTGCACTCTGTGCCCCCCCACGGAGGCCGGTAGCTGTACCATTTGGCCGAAACTATGTCCCCACTTGGGCTTTTGATCACATCAAATACTTCAATGGAGGTTCTGATATCCAGCTTCACCTTGACAAGTACACTGGTACCGGCTTCCAATCCAAAGGGTCATACTTGTTTGGTCATTTCAGCATGGACATCAAGATGGTTCCTGGTGATTCAGCTGGCACAGTTACTGCTTTCTATTTATCTTCCCAAAACTCGGAACATGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTGTTCACTGGAGGGAAAGGTGACAGAGAACAAAGAATCTATCTCTGGTTTGATCCTACAAAAGAATTCCACAGATACTCTATTCTGTGGAACATGTATCAGATTGTGTTCTTTGTGGATAATGTCCCTATCAGGGTGTTCAAGAACTGCAAGGACTTGGGAGTGAAATTCCCATTTTACCAGCCAATGAAGATGTACAACAGCTTGTGGAATGCTGATGATTGGGCCACAAGGGGTGGTTTGGAGAAAACAGATTGGTCCAAAGCCCCTTTCATAGCAGCCTACAAAGGGTTCCACATTGATGGGTGTGAAGCATCTGTGAATGCCAGGTTCTGTAACACACAAGGCAAGAAATGGTGGGATCAACCAGAGTTCCAAGACCTTGATGCAGTTCAATGGAAGAGGCTTAGGTGGGTGCGCCAGAAGTACACCATTTACAACTACTGCACTGACAGGAAGCGCAACCCTCAACTACCCCCTGAATGCAACAGAGACCGTGACATTTAA 891 0.4534 MKKMGSSLWTVCLVFASLASVALCAPPRRPVAVPFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMDIKMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHRYSILWNMYQIVFFVDNVPIRVFKNCKDLGVKFPFYQPMKMYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNARFCNTQGKKWWDQPEFQDLDAVQWKRLRWVRQKYTIYNYCTDRKRNPQLPPECNRDRDI* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02438 296 ProSitePatterns Glycosyl hydrolases family 16 active sites. 109 119 IPR008263 GO:0004553|GO:0005975
Rops8g02438 296 CDD GH16_XET 30 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops8g02438 296 Gene3D - 21 296 - -
Rops8g02438 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 34 290 IPR044791 GO:0004553
Rops8g02438 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 33 223 IPR000757 GO:0004553|GO:0005975
Rops8g02438 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 243 290 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops8g02438 296 Pfam Glycosyl hydrolases family 16 36 216 IPR000757 GO:0004553|GO:0005975
Rops8g02438 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 294 IPR013320 -
Rops8g02438 296 PIRSF EndGlu_transf 1 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops8g02438 296 FunFam Xyloglucan endotransglucosylase/hydrolase 23 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02438 Rops-Chr8 56195512 56204561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02438 4 296 Glycoside Hydrolase AT5G13870 79.863 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02438 K08235 - gmx:547775 574.318