Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02427 ATGCATAGCCTTCCCTCCCTCTCTTTCTCCTTCAATTCAATGGCCTCTCTCCTCCCAAGGCCAAAACCCATTTCCACACCCTTCACCACCACCAAGCTCAGCTCTTCCCCAAGAACATGGAGGCTCTTCAACCTCACCTACCCTTTACACCACAAAAGCAACAACAACAAACTAGTACCCTTTTCCGTCAATGCAGTCTACACACAAGGCCTCTATGCCCCTTCTTCACCCTCCAAAACTGAGAAATTTGATCCAGAGAATGACCCCATATCTGTGCTGAATGAGAGGATTCGCCGTGACTGTAGCAAAAGAGAGGTTTCAAGGAGTGTGATGGACTCTGCCGAAGCTGAGAAGTACATACAATTGGTGAAGGAACAGCAGCAGAGGGGGCTGCAGAAGCTGAAGGGTGAAAGAGAGGGTAAAGATGGTACCTTTAGTTATAAGGTAGACCCTTACACACTTCGTTCTGGGGACTATGTTGTGCACAAGAAAGTTGGTATTGGGAGGTTTGTTGGGATCAAGTTAGATGTACCACAGAATTCTTCAGAACCCACTGAGTATGTTTTCATAGAGTATGCTGATAGGATGGCAAAGCTACCTGTCAATCAGGCATCGAAAATGCTCTATAGATATAGTCTTCCAAATGAAAACAAAAAGCCTCCAACATTAAGCAAGTTGAGTGATACTAGTGTGTGGGAGAGAAGAAAGATTAAAGGGAAGATCGCGATACAGAAGATGGTTGTTGACTTGATGGAACTCTATCTGCACAGGCTCAAACAAAGAAGGCCTCCTTATCCAGAGAGTCCTGCTATGGCTGAATTCACAGCTCAATTTCCTTATGAACCCACACCAGATCAGAAACAGGCTTTTATTGATGTTGAGAAGGATTTGACAGAGCGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACGGAGGTTGCTCTGCGTGCTATCCACTGTGTTGTCTCAGCTAAAAAGCAAGTGATGGTCCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGTTTTTCTGTATATCCTGATATTAAAGTTGGAGTGCTAAGCCGGTTTCAGACCAGAGCGGAGAAGGAACAACACTTGGAAATGATTAAGAATGGTGACCTGGATATTATTGTTGGGACTCACTCACTTCTAGGAAACCGTGTTGTATACAGCAATCTTGGCCTGCTTGTGGTTGATGAGGAACAGAGGTTTGGTGTACAACAAAAGGAGAAGATTGCTTCTTTTAAAACTTCTGTGGATGTACTTACTTTATCTGCAACCCCTATACCACGAACTCTTTATTTAGCATTGACAGGGTTTCGTGATGCTAGTTTAATTACAACTCCACCTCCAGAAAGAGTTCCTATCAAGACTCACCTTTCTTCATTCAGTAAGGACAAAGTAATCTCAGCCATCAAATATGAGCTGGACCGTGGTGGTCAAGTTTTTTATGTTCTGCCACGTATTAAAGGACTTGAAGAAGTAAAGGAATTTCTGGTGGAGTCATTCCCAGATGTGGAAATAGCCATTGCCCATGGGAAGCAATACTCAAAGCAATTAGAGGAAACTATGGAGAAGTTTGCCCTAGGCGAAATAAAAATTCTTATCAGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCTAACACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTATACCAGTTGCGTGGAAGGGTTGGGCGGGCAGATAAGGAAGCATATGCACACTTATTTTATCCTGATAAAAGTCTGCTCTCTGATCAAGCATTGGAGAGGCTTGCAGCTCTTGAAGAATGCTGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAGAGACATGGGTATAAGAGGTTTTGGTACTATTTTTGGCGAACAACAGACAGGAGATGTTGGAAATGTTGGCATTGATCTTTTCTTTGAGATGCTCTTTGAGAGTTTGTCTAAGGTTGAAGATCACCGTATTGTACCAGTTCCTTATGACTCAGTGCAGGTTGAGTTAAACATCAATCCTCATCTCCCTTCTGAATACATAAATCATCTGGAGAACCCTATGGAAATAATAAATGAAGCTGAGAGAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTGCGCAGCCAATATGGCAAAGAGCCTCGCCCCATGGAGATTTTATTAAAGAAGCTTTACTTGAGGAGAATGGCGGCAGATATAGGGATAACCAGAATTTACTCTTCAGGGAAGACAGTGTATATGAAAACAAACATAAGTAAAAAGGTATTCAAGATTATGACAGAGTCGATGACATCAGATATATATAGAAATTCATTGGTTCTCGAGGGGGACAAAATTAAGGCTGAACTTCTGTTGGAGCTACCAAAAGAGCAACTTCTTAATTGGATCTTTCAATGTGTGGCTGAACTTCATGCTTCACTACCTTCCCTCATAAAGTACTAG 2508 0.4203 MHSLPSLSFSFNSMASLLPRPKPISTPFTTTKLSSSPRTWRLFNLTYPLHHKSNNNKLVPFSVNAVYTQGLYAPSSPSKTEKFDPENDPISVLNERIRRDCSKREVSRSVMDSAEAEKYIQLVKEQQQRGLQKLKGEREGKDGTFSYKVDPYTLRSGDYVVHKKVGIGRFVGIKLDVPQNSSEPTEYVFIEYADRMAKLPVNQASKMLYRYSLPNENKKPPTLSKLSDTSVWERRKIKGKIAIQKMVVDLMELYLHRLKQRRPPYPESPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIHCVVSAKKQVMVLAPTIVLAKQHFDVISERFSVYPDIKVGVLSRFQTRAEKEQHLEMIKNGDLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVQQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKDKVISAIKYELDRGGQVFYVLPRIKGLEEVKEFLVESFPDVEIAIAHGKQYSKQLEETMEKFALGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAHLFYPDKSLLSDQALERLAALEECCELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRIVPVPYDSVQVELNINPHLPSEYINHLENPMEIINEAERVAEKDIWSLMQFTENLRSQYGKEPRPMEILLKKLYLRRMAADIGITRIYSSGKTVYMKTNISKKVFKIMTESMTSDIYRNSLVLEGDKIKAELLLELPKEQLLNWIFQCVAELHASLPSLIKY* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02427 835 SMART CarD_TRCF_2 153 255 IPR003711 -
Rops8g02427 835 Gene3D - 220 461 IPR027417 -
Rops8g02427 835 Gene3D - 681 828 IPR037235 -
Rops8g02427 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 604 IPR027417 -
Rops8g02427 835 Gene3D - 157 219 - -
Rops8g02427 835 Pfam CarD-like/TRCF domain 154 254 IPR003711 -
Rops8g02427 835 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 459 IPR014001 -
Rops8g02427 835 Pfam DEAD/DEAH box helicase 304 442 IPR011545 GO:0003676|GO:0005524
Rops8g02427 835 SMART TRCF_a_2_a 685 783 IPR005118 GO:0006281
Rops8g02427 835 SMART ultradead3 278 470 IPR014001 -
Rops8g02427 835 Pfam Helicase conserved C-terminal domain 483 589 IPR001650 -
Rops8g02427 835 SUPERFAMILY CarD-like 148 216 IPR036101 -
Rops8g02427 835 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 693 795 - -
Rops8g02427 835 Gene3D - 154 668 IPR027417 -
Rops8g02427 835 Pfam TRCF domain 686 772 IPR005118 GO:0006281
Rops8g02427 835 SMART helicmild6 506 590 IPR001650 -
Rops8g02427 835 CDD DEXHc_TRCF 268 461 - -
Rops8g02427 835 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 634 IPR001650 -
Rops8g02427 835 SUPERFAMILY TRCF domain-like 678 823 IPR037235 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02427 Rops-Chr8 56019387 56047537 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02427 - - gmx:100791900 1359.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02427 8 56019387 56047537 Rops8g02427 8 56019387 56047537 ECH