Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02422 ATGGATCATGTTTTGTTGGCATCACAAGAAACGAAGGAATCAAGGGAGATGAGAATTCGAAGCCTTTTTAGTTTCTTTGATAAGGAGAATCGTGGTTACTTGGAGTATGAACACATTGAGGCTGGTCTCTCTGCTCTTCAGATTCCATCTGAGTCTAAGGATTTGTTGAATGCTTGTGATGTGAACAAGGATGGGAGAGTTGATTACATGGAGTTCAAGAGGTATATGGATGATAAAGAGATTGAGCTTTATAGAATATTTCAGGCCATTGATGTTGAGCATAATGGGTGCATTTTGCCAGAGGAGCTTTGGGAGGCACTTGTAAGAGCAGGGATTAAGATTGATGATGAGGAACTTGCTCGATTTGTGGAGCGTGTTGATAAGGATCATATTGGTGTTATAACATTTGAGGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACTATTGAGAACATTTACCATTATTTGGAGCGGATGTGCATGGTTGATATTGGGGAACATACTGTCATTCCTGCAGGTGTTGGTAAGCACATTCATGCAAGCAGGTATCTGATTGCAGGAGGAGTAGCAGGTGCAGCATCACGCACAGCAACTGCGCCCCTTGATCGTCTAAAGGTTGTACTGCAAGTCCAAACAACCCAAGCTCACATAATGCCTGCAATAAAAGATATATGGAAAGAAGGTGGCCTCTTAGGATTTTTTCGAGGCAATGGCTTAAATGTTCTCAAGGTGGCCCCTGAGAGTGCCATTAGATTTTATACCTATGAGATGCTGAAGACCTTGATTGTGAATGCCAAAGGAGAAGAGACAAAGGCTAATATTGGAGCTCTGGGGCGACTGCTGGCTGGTGGTATAGCTGGTGCTGTAGCTCAAACTGCGATATACCCAATGGATCTTGTTAAAACACGACTACAAACATATGCTTGTGCAAGTGGAAGAATTCCTAGTCTTGGAACCCTTTCTAAAGATATATGGGTTCAGGAAGGACCCCGGGCTTTTTATAGGGGATTGATTCCTTCTCTTCTTGGGATTATCCCATATGCTGGGATAGATCTTGCTGTGTATGAAACCTTGAAGGATATGTCCAAAAAGTATATTCTTCATGATGGAGAAGCTGGCCCTCTAGTACAATTAGGATGTGGGACGGTATCAGGAGCTCTTGGAGCAACATGTGTTTACCCATTACAGGTCGTTAGAACAAGAATGCAGGCTCAACGCTCTTATAAGGGAATGTCTGACGTATTCAGGAAAACCTTGGAACATGAAGGGTTTAGGGGATTCTACAAAGGAATATTTCCTAACTTGTTCAAAGTTGTACCATCGGCAAGTATCACTTACATGGTTTACGAGTCTATGAAAAAAGGTTTGGATTTGGAGTGA 1389 0.4255 MDHVLLASQETKESREMRIRSLFSFFDKENRGYLEYEHIEAGLSALQIPSESKDLLNACDVNKDGRVDYMEFKRYMDDKEIELYRIFQAIDVEHNGCILPEELWEALVRAGIKIDDEELARFVERVDKDHIGVITFEEWRDFLLLYPHEATIENIYHYLERMCMVDIGEHTVIPAGVGKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQTTQAHIMPAIKDIWKEGGLLGFFRGNGLNVLKVAPESAIRFYTYEMLKTLIVNAKGEETKANIGALGRLLAGGIAGAVAQTAIYPMDLVKTRLQTYACASGRIPSLGTLSKDIWVQEGPRAFYRGLIPSLLGIIPYAGIDLAVYETLKDMSKKYILHDGEAGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRSYKGMSDVFRKTLEHEGFRGFYKGIFPNLFKVVPSASITYMVYESMKKGLDLE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02422 462 PRINTS Mitochondrial carrier protein signature 186 199 IPR002067 GO:0055085
Rops8g02422 462 PRINTS Mitochondrial carrier protein signature 239 259 IPR002067 GO:0055085
Rops8g02422 462 PRINTS Mitochondrial carrier protein signature 292 310 IPR002067 GO:0055085
Rops8g02422 462 PRINTS Mitochondrial carrier protein signature 199 213 IPR002067 GO:0055085
Rops8g02422 462 PRINTS Mitochondrial carrier protein signature 384 406 IPR002067 GO:0055085
Rops8g02422 462 PRINTS Mitochondrial carrier protein signature 337 355 IPR002067 GO:0055085
Rops8g02422 462 Pfam EF-hand domain pair 82 141 IPR002048 GO:0005509
Rops8g02422 462 SUPERFAMILY EF-hand 10 156 IPR011992 -
Rops8g02422 462 Pfam EF-hand domain pair 50 78 IPR002048 GO:0005509
Rops8g02422 462 FunFam Mitochondrial substrate carrier family protein 177 460 - -
Rops8g02422 462 PANTHER SOLUTE CARRIER FAMILY 25 139 459 - -
Rops8g02422 462 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Rops8g02422 462 ProSiteProfiles Solute carrier (Solcar) repeat profile. 181 264 IPR018108 -
Rops8g02422 462 Gene3D Mitochondrial carrier domain 177 459 IPR023395 -
Rops8g02422 462 Gene3D - 94 169 - -
Rops8g02422 462 ProSiteProfiles Solute carrier (Solcar) repeat profile. 375 458 IPR018108 -
Rops8g02422 462 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Rops8g02422 462 ProSiteProfiles EF-hand calcium-binding domain profile. 14 49 IPR002048 GO:0005509
Rops8g02422 462 Pfam Mitochondrial carrier protein 180 267 IPR018108 -
Rops8g02422 462 Pfam Mitochondrial carrier protein 277 367 IPR018108 -
Rops8g02422 462 Pfam Mitochondrial carrier protein 376 459 IPR018108 -
Rops8g02422 462 ProSiteProfiles Solute carrier (Solcar) repeat profile. 277 364 IPR018108 -
Rops8g02422 462 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 94 169 - -
Rops8g02422 462 SUPERFAMILY Mitochondrial carrier 179 453 IPR023395 -
Rops8g02422 462 Gene3D - 1 82 - -
Rops8g02422 462 SMART efh_1 82 110 IPR002048 GO:0005509
Rops8g02422 462 SMART efh_1 18 46 IPR002048 GO:0005509
Rops8g02422 462 SMART efh_1 51 79 IPR002048 GO:0005509
Rops8g02422 462 SMART efh_1 118 146 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02422 Rops-Chr8 55907661 55910618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02422 1 462 EF-hand Containing Proteins AT5G51050 71.888 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02422 K14684 - gmx:100775805 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02422 8 55907661 55910618 Rops8g02422 8 55907661 55910618 ECH