Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02372 ATGAATTATTTCCCAGACGAGGTAATAGAGCATGTATTTGGTTATGTGGTGTCACACCGTGACCGGAACGCTTTGTCTCTGGTGTGTAAAAGTTGGTACAGAATAGAGAGATGTACCAGGGAGAAGGTGTTCATAGGGAACTGTTACTCTATTAGTCCTGAGAGGTTGATCCAGAGGTTTCCTGCTTTAAAATCTCTGACTTTGAAGGGAAAACCTCATTTTGCTGATTTCAGTTTGGTTCCTCATGATTGGGGTGGTTTTGTGTCTCCATGGATTGAAGCACTGGCCAAGAGTAGGGTAGGTTTGGAGGAGCTTAGACTGAAGAGGATGGTGGTCTCGGATGAGAACCTGGAGCTACTTTCTCGTTCTTTCATGAATTTTAAGTCTCTTGTTCTTGTTAGCTGTGAAGGGTTCACCACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGGTATCTTAAGGAGCTGGACCTGCAAGAAAATGAAGTTGATGATCACAAAGGCCAGTGGCTAAGTTGCTTTCCTGATAGCGGTACATCACTTGTTTCTCTTAATTTCGCTTGCCTTAAAGGAGAGGTTAACTTGGGAGCTCTTGAGAGACTTGTGGCTAGATCTCCTAACCTTAAGAGTCTAAGGTTAAATCGATCTGTGCCCCCTTCTACACTGCAAAGGATAATGATGCGAGCACCTCAACTAGTGGATTTGGGTATTGGATCATTTGCCTATGATCCAATTGGTTTTGGAATAATGGTCCCTGATCCAGATTCAGAGACCTACACAAAGCTAAAGCAAACCATTGTAAAGTGCAAGTCAATAACCAGTTTGTCAGGATTTTTGGAAGTTGCTCCTCACTGCCTTACAGCTATATATCCCATTTGCCGGAATTTAACATCCTTAAACTTGAGCTATGCAGCAGGCATTCAGGGCAATGAGCTCATACAACTAATTCGGTTCTGTGGGAAACTTCAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGATTAGGAGTTGTAGCTACAACTTGTAAAGATTTGCAAGAATTGAGGGTTTTTCCATCTGATACCTTTGGAAATCCTACAGCTGTGACAGAAAAAGGACTTGTTGCAATATCAATGGGTTGCCCCAAGCTTCACTCATTACTCTACTTCTGCCACCAGATGACAAATGCTGCCCTCATAACAGTAGCCAAGAACTGCCCGAATTTCATCCGGTTCAGGCTGTGCATCCTCAACGCAACGAAACCGGACCCTGACACAATGCAGCCACTGGATGAAGGTTTTGGCGCGATCGTGCAGTCATGCAGGCGGCTGAGGCGGCTTTCACTCTCTGGCCAGCTGACCGACCAGGTGTTCCTCTACATAGGGATGTATGCTGAGAATCTTGAGATGTTGTCCATTGCATTTGCTGGAGAGAGTGACAAGGGGATGCAGTATGTGTTGAATGGATGCAAGAAACTTCGCAAGCTGGAGATAAGGGATTGCCCTTTTGGAAACATGGCACTTCTAACGGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGTGAAGTGACTGTTGGAGCTTGCAAGACACTTGCTAAGAAGATGCCAAGGTTAAATGTGGAGATCTTCAATGAGAATGAACAAGCAGATTGTACTAGTATGGAAGATGGGCAGAAAGTAGAGAAGATGTATTTGTATCGTACATTGGTTGGGAAAAGGAAAGATGCACCAGAATATGTATGGACTCTGTAG 1749 0.4443 MNYFPDEVIEHVFGYVVSHRDRNALSLVCKSWYRIERCTREKVFIGNCYSISPERLIQRFPALKSLTLKGKPHFADFSLVPHDWGGFVSPWIEALAKSRVGLEELRLKRMVVSDENLELLSRSFMNFKSLVLVSCEGFTTDGLAAIAANCRYLKELDLQENEVDDHKGQWLSCFPDSGTSLVSLNFACLKGEVNLGALERLVARSPNLKSLRLNRSVPPSTLQRIMMRAPQLVDLGIGSFAYDPIGFGIMVPDPDSETYTKLKQTIVKCKSITSLSGFLEVAPHCLTAIYPICRNLTSLNLSYAAGIQGNELIQLIRFCGKLQRLWIMDCIGDKGLGVVATTCKDLQELRVFPSDTFGNPTAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILNATKPDPDTMQPLDEGFGAIVQSCRRLRRLSLSGQLTDQVFLYIGMYAENLEMLSIAFAGESDKGMQYVLNGCKKLRKLEIRDCPFGNMALLTDIGKYETMRSLWMSSCEVTVGACKTLAKKMPRLNVEIFNENEQADCTSMEDGQKVEKMYLYRTLVGKRKDAPEYVWTL* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02372 582 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 81 540 - -
Rops8g02372 582 Pfam Transport inhibitor response 1 protein domain 61 107 IPR041101 -
Rops8g02372 582 SUPERFAMILY RNI-like 60 551 - -
Rops8g02372 582 Gene3D Ribonuclease Inhibitor 41 582 IPR032675 -
Rops8g02372 582 CDD F-box_AtTIR1-like 1 40 - -
Rops8g02372 582 FunFam Transport inhibitor response 1 1 40 - -
Rops8g02372 582 Pfam Leucine Rich repeat 149 165 IPR001611 GO:0005515
Rops8g02372 582 Pfam F-box 2 41 IPR041567 -
Rops8g02372 582 SMART LRR_CC_2 484 509 IPR006553 -
Rops8g02372 582 SMART LRR_CC_2 293 318 IPR006553 -
Rops8g02372 582 SMART LRR_CC_2 435 458 IPR006553 -
Rops8g02372 582 SMART LRR_CC_2 124 149 IPR006553 -
Rops8g02372 582 SMART LRR_CC_2 375 399 IPR006553 -
Rops8g02372 582 SUPERFAMILY F-box domain 1 35 IPR036047 GO:0005515
Rops8g02372 582 FunFam Transport inhibitor response 1 41 582 - -
Rops8g02372 582 Gene3D - 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02372 Rops-Chr8 54955438 54958645 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02372 - - gmx:100812516 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02372 8 54955438 54958645 Rops8g02372 8 54955438 54958645 ECH