Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02310 ATGACTAATAAAAAAGCATTACCTGTCCCAAAATTTGGTAGTGGATTTTGCTTTGGTTACCAAAATACCGCATCAGAAAAGATGAGAATTCTTGAATTATCACCCTCTGATGGTCATGGTTCTTCAGCAGATGAACCTTTACCTCAGGATGCAGATTATAATGTTCATAGTCTCAGCGACGAGCTAGAGACTTCTATCTTGGCTAGATTCCCAAGATCACAGCTCTGGAAATTGTGCTTTCTAAATAAGCGGTTCTTGACTCTAATGAAGAGTGGTGAGATCTACAAAATTAGAAGAGAGTTAGGAGTCAAAGAACCATCAGTGTTTATGTTAGCTAGTGGAGAGAGCAGTTGGTGGGGAATGGATTGGCCTTTCAAGTCCAGCAGGAAGCTCCCTCCTATTCAATCAGATTACAACTTTGAGTTTGGAGATAAGGAATCATTTTCTGCAGGGTCCCATCTCTTGGTTTCAGGCAAGGAGATTGATGGAGCTGTTATTTGGAGGTATGATTCAGAAACAAATGAATGGCTCAGAGGGCCATCTATGATCAACCCCAGGTGCCTTTTTGCCTCAGCTACTTGTGGTACTTTTGCTTTTGTTGCTGGTGGTCTTGAGACAGAGACTTACACCCAAGTCTTGGATGCTGCTGAGAAATACAATTCTGAGAACCACTCTTGGGAACCCCTCCCGAAGATGAAGCAAAAGAGGAAGTTTTGCTCAGGTTGTTACATGGATAACAAGTTCTATGTTATTGGAGGACAGGACGAGAATCATAAGGACCTCACTTGTGGGGAATTCTTTGATGCAAAGACAAACAGTTGGAACTTGATTCCTAACATTTTGAGAGATATTCCTCTTTCAGCTTCACAATCTCCACCTCTTATATCTGTTGTGTGTAATCAGCTTTACACACTAGATGCCTCTTCTAATGAGCTCAAAGTGTATCTTAAGGGAAGCAATTCATGGAAGAAGTTAGGGGTGGTTCCAGTGAAAGCTGATGCTCAACGAGGTTGGGGTGTTGCATTTAAATCTCTTGGTGATGAGTTACTTGTTATTGGAGCACCCTCTGACTCACATACAGAACGTGCCCTGGCTATATATACTTGCTGCCCTGATCCAATGGTTGAGAAATTGAGATGGAGGCAAATTGAATGTGGCAGCATCCAGCTTAATCACTTCATTAGAAATTGTGCTGTGATGAAGTCTGAATTTTGA 1215 0.4181 MTNKKALPVPKFGSGFCFGYQNTASEKMRILELSPSDGHGSSADEPLPQDADYNVHSLSDELETSILARFPRSQLWKLCFLNKRFLTLMKSGEIYKIRRELGVKEPSVFMLASGESSWWGMDWPFKSSRKLPPIQSDYNFEFGDKESFSAGSHLLVSGKEIDGAVIWRYDSETNEWLRGPSMINPRCLFASATCGTFAFVAGGLETETYTQVLDAAEKYNSENHSWEPLPKMKQKRKFCSGCYMDNKFYVIGGQDENHKDLTCGEFFDAKTNSWNLIPNILRDIPLSASQSPPLISVVCNQLYTLDASSNELKVYLKGSNSWKKLGVVPVKADAQRGWGVAFKSLGDELLVIGAPSDSHTERALAIYTCCPDPMVEKLRWRQIECGSIQLNHFIRNCAVMKSEF* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02310 404 Pfam Kelch motif 185 232 IPR006652 GO:0005515
Rops8g02310 404 Pfam Kelch motif 236 279 IPR006652 GO:0005515
Rops8g02310 404 SMART kelc_smart 153 196 IPR006652 GO:0005515
Rops8g02310 404 SMART kelc_smart 199 246 IPR006652 GO:0005515
Rops8g02310 404 FunFam F-box/kelch-repeat protein SKIP11 100 385 - -
Rops8g02310 404 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 51 401 - -
Rops8g02310 404 Gene3D - 111 385 IPR015915 GO:0005515
Rops8g02310 404 SUPERFAMILY Kelch motif 144 367 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02310 Rops-Chr8 53123203 53125952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02310 58 277 Miscellaneous Gene Families AT4G33900 26.549 1.81e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02310 - - gmx:100777338 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02310 8 53123203 53125952 Rops8g02310 8 53123203 53125952 ECH