Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01926 ATGGCCGAGCTGCATTCTTCCGCCGCCGCCACTGCTCCTCCTCCTTCCGCGGCTATCGGTGAAGCTTCGACATCGGAGGAAACAGCGGCAAACGATTCTCAAACTCGATTCCGGTCGCTGGACACAGCACGCGAGTCTCGGCGCGTGAGCATTACCGTAGGAAGAAGCAGGTGGAGTTTTGGCAATGACTCCGCCGTTGCTAGGGATGATACATGGTCTTGCTTTGCCGTTGTCTTCAGCTTTTGGTTCTTCGTTTCGATGACTTTGATACTGGGGGTTTATGGGTCGATGGTCATCGGTCTTGGTCCAGAAACTTCAATTGTTTTTCAACCTAGCCCTGTGTTCGTGCAATATGTAAAGGTAGAGAACTTAGAGCCAAAGCCAGGACTCGTTCTTTATGGTACATATCAATATCCACCTCTTGATGTTGTTAACACTTGGGAAGAAACTCGTAATGTATCTCTTCCCTCTGGCTCACATAAGGAATGGAAATATTATCTGAATAAAGGGTCTGAAGTAAATATTTCGTATCGCTTGAGCTCTGAGAGCTCCTCTGTTTTCCTTGTAATTGCAGAAGGGGCTGAAAGCCTCTCTGCGTGGTTGGAGGACCCAACATATCCTAATACAACTCTGTCTTGGAACGTGATCCATGGAACTGGTATGATTACACAGAAAATATTCTTCTCGTCGAGCTATTATGTGGCGTTGGGTAATTTGGAGGAGGAGGTGGAGGTGGAATTAAACCTCACTGTTAGGGCCTTCATGCACAATACAACGAATGCTTACTACAAATGTGCTCTGACTAGTAGTCCATGCAGTTTGAATATTTTCTTTCCTGATGGAAATGCAGCTGTCTTAGTTTCTCCTGGTCCACAACAGAACACATCGAACGATGAGTGGTATGTCAAACTGTCCTATGGACCAAGATGGCTGACATATATTTTTGGCATAGGTGGAATGACTTTGCTTATGTTTTGGGCCTTCAACTTCTTGAACAAGCTCCAGTGTGCCCGTGAAGATAGAGCAGGAGTTACATCTGACGGAACAACACCACAGAGAGCCCCTTTACTTTCTCACAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTACCACAGGATGAGGAGGATCTTGACTTTCTTACAGGAGGTTCCATTGATGGGAAGCTTTTAGGTGATGGTGAAACCAGTAATAATACTAAGCGTCTTTGTGCAATTTGCTTTGATGCTCCACGAGACTGCTTCTTCCTTCCATGTGGGCACTGTGTGGCTTGTTTTGCATGTGGAACTAGGATAGTTGAGGCAGAAGGCACTTGCCCTGTTTGTCGTAGGAACATGAAGAAAGTAAGGAAGATTTTTACTGTTTGA 1377 0.4539 MAELHSSAAATAPPPSAAIGEASTSEETAANDSQTRFRSLDTARESRRVSITVGRSRWSFGNDSAVARDDTWSCFAVVFSFWFFVSMTLILGVYGSMVIGLGPETSIVFQPSPVFVQYVKVENLEPKPGLVLYGTYQYPPLDVVNTWEETRNVSLPSGSHKEWKYYLNKGSEVNISYRLSSESSSVFLVIAEGAESLSAWLEDPTYPNTTLSWNVIHGTGMITQKIFFSSSYYVALGNLEEEVEVELNLTVRAFMHNTTNAYYKCALTSSPCSLNIFFPDGNAAVLVSPGPQQNTSNDEWYVKLSYGPRWLTYIFGIGGMTLLMFWAFNFLNKLQCAREDRAGVTSDGTTPQRAPLLSHKDDDLSSWGSSYDSLPQDEEDLDFLTGGSIDGKLLGDGETSNNTKRLCAICFDAPRDCFFLPCGHCVACFACGTRIVEAEGTCPVCRRNMKKVRKIFTV* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01926 458 MobiDBLite consensus disorder prediction 21 37 - -
Rops8g01926 458 ProSiteProfiles Zinc finger RING-type profile. 407 446 IPR001841 -
Rops8g01926 458 SUPERFAMILY RING/U-box 406 452 - -
Rops8g01926 458 SMART ring_2 407 445 IPR001841 -
Rops8g01926 458 MobiDBLite consensus disorder prediction 343 369 - -
Rops8g01926 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 458 IPR013083 -
Rops8g01926 458 PANTHER OS05G0521000 PROTEIN 62 458 - -
Rops8g01926 458 Pfam Domain of unknown function (DUF4792) 129 197 IPR032008 -
Rops8g01926 458 MobiDBLite consensus disorder prediction 1 41 - -
Rops8g01926 458 Pfam Domain of unknown function (DUF4793) 221 326 IPR032010 -
Rops8g01926 458 Pfam Zinc finger, C3HC4 type (RING finger) 404 452 - -
Rops8g01926 458 FunFam E3 ubiquitin-protein ligase APD2 396 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01926 Rops-Chr8 43940313 43945688 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01926 - - gmx:100791057 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01926 8 43940313 43945688 Rops8g01926 8 43940313 43945688 ECH