Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01122 ATGTCTTCCCCAAGCAAGCGGCGAGACATGGACATGATGAATCTGATGATGCGTGATTACAAGGTGGAGACGATTAATGATGGAGTGCATGAGTTTTATGTGCATTTCCATGGACCCGAAAAAAGTCCTTATGAGGGTGGTGTGTGGAAAGTAAGAGTGGAGTTGCCAGATGATTATCCTTTTAAATCTCCTTCCATTGGCTTTGTCAATAAGATCTATCACCCTAATATTGACGAGTCGTCAGGAGCAATTTGTCTGGATGTTCTTAATCAAACATGGAGCCCTATGTCTGATCTTGTTGCTGTATTTGAGTTGTTTCTACCACAACTTCTTAAGTATCCCAATGCATCAGACCCCTTGAATGGTGATGCTGCATCTCTTATGATGCATGACCAAGCTAGTTATGAACAAAAGGTCAAAGAGTACTGTAAGACATACGCTAAACCCGAAGACATAGGGGAAGCCACAGAAGAGAAATCTAGTGATGAGGAGATAAGTGAAGATGGACGTGATTCTAGTGATGAACAAGTGGCTGGTAAAGCAGATCCCTAG 552 0.4239 MSSPSKRRDMDMMNLMMRDYKVETINDGVHEFYVHFHGPEKSPYEGGVWKVRVELPDDYPFKSPSIGFVNKIYHPNIDESSGAICLDVLNQTWSPMSDLVAVFELFLPQLLKYPNASDPLNGDAASLMMHDQASYEQKVKEYCKTYAKPEDIGEATEEKSSDEEISEDGRDSSDEQVAGKADP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01122 183 CDD UBCc 10 143 IPR000608 -
Rops8g01122 183 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Rops8g01122 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Rops8g01122 183 Pfam Ubiquitin-conjugating enzyme 13 142 IPR000608 -
Rops8g01122 183 SMART ubc_7 4 148 - -
Rops8g01122 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Rops8g01122 183 SUPERFAMILY UBC-like 3 148 IPR016135 -
Rops8g01122 183 MobiDBLite consensus disorder prediction 163 183 - -
Rops8g01122 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Rops8g01122 183 MobiDBLite consensus disorder prediction 147 183 - -
Rops8g01122 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 30 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01122 Rops-Chr8 23856785 23859303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01122 19 108 Miscellaneous Gene Families AT3G17000 31.633 8.19e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01122 K10576 - gmx:100804969 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01122 8 23856785 23859303 Rops8g01122 8 23856785 23859303 ECH
Rops8g01122 8 23856785 23859303 Rops4g01500 4 37833064 37836691 PCT