Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00955 ATGGCGGAAAATGTCTTACCTGAGCTGAAAATGTTTGTGTTGTTTTGTTTGTTGCTAGTTCAAGTGTCAGTTTCTGAAATCATTTTTGAAGAGCGTTTTGATGATGGCTGGCAAAGTCGCTGGGTAAAATCAGACTGGAAAAAGAGTGAAGGCAAAGCTGGTTCATTCAAGCACACAGCTGGAAAATGGGCTGGTGATCCAGATGATAAAGGTATTCAAACATCTAGTGATGCCAAACACTTTGCCATCTCTGCAAAGATACCAGAATTCAGCAACAAGAACAGAACATTGGTCCTCCAGTTTTCTATAAAATTTGAGCAAGATATTGAGTGTGGTGGAGGTTACTTGAAGCTTCTCTCTGGATTTGTTAACCAAAAGAAGTTTGGCGGGGATACGCCTTATAGTTTAATGTTTGGACCAGATTTATGTGGCACAGATACAAAGAAGCTCCATCTCATACTCTCCTACCAAGGTCAAAATTACCCCGTAAAGAAGGATCTGCAATGTGAAACTGACAAGTTAACTCATTTCTACACATTCATTCTCAGGCCAGATGCCTCATACAGTGTACTGATTGATAATAGAGAGAGAGATTCAGGAAGCATGTATAAAGATTGGGATATTCTTCCTCCACCAAAAATCAAAGATGTCAAGGCAAAAAAGCCTGCAGACTGGGATGACAGAGAATACATTGAAGACCCTAATGGTGTCAAACCTGAGGGATATGATTCAATCCCAGCAGAAATTCCTGATCCAAAAGCTAAAGAGCCTGATAATTGGGATGAAGAGGAAGATGGAATATGGAAACCACCAAAGATACCAAATCCAGCATACAAAGGACCATGGAAAAGAAAGAAAATAAAGAATCCTAATTACAAAGGGAAATGGAAAACTCCATGGATAGATAATCCAGAGTTTGAAGATGACCCTGATCTTTATGTGCTTAAGCCTATCAAGTATGTTGGCATTGATGTATGGCAGGTTAAAGGCGGTTCAGTTTTTGACAACATTTTGATTTGTGATGATCCTGATTATGCAAAACAAGTTGTTGATGAAGTGTTTGCCAACAGGGAGATGGAAAAGGAGGCTTTTGAGGAAGCAGAGAAAGTGAGAAAAGCCAAAGAGGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAAAGGAGGAGACGAGAGAGAGGTCATGATCGAAGACACCGGGACAGATATAGAGACAGATATAGGAAGCATCGCCGTGATTACATGGATGATTATCATGATGAACTTTGA 1269 0.4035 MAENVLPELKMFVLFCLLLVQVSVSEIIFEERFDDGWQSRWVKSDWKKSEGKAGSFKHTAGKWAGDPDDKGIQTSSDAKHFAISAKIPEFSNKNRTLVLQFSIKFEQDIECGGGYLKLLSGFVNQKKFGGDTPYSLMFGPDLCGTDTKKLHLILSYQGQNYPVKKDLQCETDKLTHFYTFILRPDASYSVLIDNRERDSGSMYKDWDILPPPKIKDVKAKKPADWDDREYIEDPNGVKPEGYDSIPAEIPDPKAKEPDNWDEEEDGIWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIDVWQVKGGSVFDNILICDDPDYAKQVVDEVFANREMEKEAFEEAEKVRKAKEEEEAQRAREEGERRRRERGHDRRHRDRYRDRYRKHRRDYMDDYHDEL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00955 422 SUPERFAMILY P-domain of calnexin/calreticulin 207 322 IPR009033 GO:0005509|GO:0005515
Rops8g00955 422 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 224 IPR013320 -
Rops8g00955 422 PIRSF Calreticulin 7 415 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 Gene3D Calreticulin/calnexin, P domain 212 312 IPR009033 GO:0005509|GO:0005515
Rops8g00955 422 ProSitePatterns Calreticulin family signature 2. 136 144 IPR018124 GO:0005509
Rops8g00955 422 Coils Coil 356 392 - -
Rops8g00955 422 FunFam Calreticulin 1b 26 209 - -
Rops8g00955 422 PRINTS Calreticulin signature 287 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 PRINTS Calreticulin signature 132 148 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 PRINTS Calreticulin signature 249 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 PRINTS Calreticulin signature 320 340 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 PRINTS Calreticulin signature 221 234 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 MobiDBLite consensus disorder prediction 226 273 - -
Rops8g00955 422 Gene3D - 26 383 - -
Rops8g00955 422 MobiDBLite consensus disorder prediction 367 392 - -
Rops8g00955 422 PANTHER CALRETICULIN AND CALNEXIN 11 385 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 MobiDBLite consensus disorder prediction 367 402 - -
Rops8g00955 422 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Rops8g00955 422 Pfam Calreticulin family 266 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 Pfam Calreticulin family 29 265 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops8g00955 422 MobiDBLite consensus disorder prediction 249 269 - -
Rops8g00955 422 FunFam Calreticulin 211 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00955 Rops-Chr8 20615523 20620557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00955 10 347 Miscellaneous Gene Families AT5G61790 35.427 2.10e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00955 K08057 - gmx:100801827 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00955 8 20615523 20620557 Rops8g00955 8 20615523 20620557 ECH