Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00953 ATGTTGGTGTTGTTCATTTGCGTGTTCCTTTTGTTGGTATTTTTATTCAGATTCGCCACTGCTTATGGCGATTTCACTTTGATGTCTAAGAAGCAGCCAAAACGCCAAGAAATTGAAGATAAGGTTGTTTGGATTACTGGTGCCAGCCGTGGAATTGGGGAGGTTCTAGCTAAACAGCTTGCAAGTTTAGGGGCCAAGCTAATAATCTCTGCTAGGAATGAAGCTGAGCTAAACCGAGTAAAGACACAGCTGAAAGGTAAGCATGCACCTGACGAAGTCAAGATTTTACCATTGGATTTATCGTCCGGAGAGGATTCTCTTAGGAAGGTTGTTGAGGAAGCAGAATCCCTTTTTCCAGATTCTGGTGTTGATTATATGATCCACAATGCAGCTTTTGAGCGTCCTAAAACATCAGCCTTAGATGTAACTGAGGAAGGTCTTAAGGCAACATTTGACGTCAATGTTCTGGGGACAATAACTCTCACAAGGCTCTTGGCACCTTTCATGCTGAAGAGGGGGCAAGGTCATTTTGTGGTGATGAGCAGTGCAGCAGGAAAGGCACCTGCCCCAGGTCAGGCTGTATATTCCGCTTCTAAATATGCCCTAAATGGGTATTTCCACTCCCTGCGTTCAGAGCTCTGTCAGAAAGGAATCCGGGTAACTATTGTCTGTCCTGGTCCAATAGAAACATCAAATAATGCTGGGGTGAAGGTTTCATCTGAGAAGCGTTTGTCATCAGAAAGGTGTGCAGAGCTGACTATTATTGCTGCAACCCATGGCTTAAAGGAAGCTTGGATATCATATCAGCCTGTGCTTCTTGTCATGTATCTTGTTCAATACATGCCGACTGTTGGTTATTGGCTCATGGACAAGGTTGGCAAAAATCGTGTAGAAGCTGCAGCACAGAAAGGAAACATTTATTCTTTGAGCCTATTGCTTGGGAAAAATAAGGCAGCATGA 960 0.4396 MLVLFICVFLLLVFLFRFATAYGDFTLMSKKQPKRQEIEDKVVWITGASRGIGEVLAKQLASLGAKLIISARNEAELNRVKTQLKGKHAPDEVKILPLDLSSGEDSLRKVVEEAESLFPDSGVDYMIHNAAFERPKTSALDVTEEGLKATFDVNVLGTITLTRLLAPFMLKRGQGHFVVMSSAAGKAPAPGQAVYSASKYALNGYFHSLRSELCQKGIRVTIVCPGPIETSNNAGVKVSSEKRLSSERCAELTIIAATHGLKEAWISYQPVLLVMYLVQYMPTVGYWLMDKVGKNRVEAAAQKGNIYSLSLLLGKNKAA* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00953 319 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Rops8g00953 319 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Rops8g00953 319 PRINTS Glucose/ribitol dehydrogenase family signature 121 132 IPR002347 -
Rops8g00953 319 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Rops8g00953 319 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Rops8g00953 319 Pfam short chain dehydrogenase 41 235 IPR002347 -
Rops8g00953 319 Gene3D - 23 298 - -
Rops8g00953 319 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 2 318 - -
Rops8g00953 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 291 IPR036291 -
Rops8g00953 319 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 41 231 - -
Rops8g00953 319 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 182 210 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00953 Rops-Chr8 20590159 20596640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00953 37 236 Acyl Lipid Metabolism Gene Families AT1G62610 30.732 1.17e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00953 K11165 - gmx:100795991 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00953 8 20590159 20596640 Rops8g00953 8 20590159 20596640 ECH