Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00952 ATGGAGGTTGTTTCGCTGCCAATGTGCAGCACCATCATAACCGCTGCCAAAAGCTTGAGGTGTAAACAACAACAATCACTTCTCATTCCACAAAACCCCACTTCTTCTTCTTCTAAACATTTCCCCTTCTTATCTTACCGCACCACTCCTTCTCGTTTTCCTCCACCACTTGTTTTGGCTGCCACGCCGGAGAACCAGTTGAGCGTTGGGGAAGGGGAGGGTGCTGATACAAAGGAATGGGCACTACAAGATTTTTATTCCCTGAGGCGGGATGTTGAAATTACATCACAGCGTGCTGAAGAGATTAGAGAATCTTCTGGTCTTCAGCTACTGGAGCAAGAAGTTGCCGATTTGGAGGAGAAAGCAGCTGATAGCTCCTTTTGGGACAATCGTGGCAAAGCTCAAGAGACTCTTTCGACATTGGCTGATGTCAAAGATAAGATAAAATTGCTCACTGAGTTCAAAACCCAGGTTGAGGATGCAGAAACAATAGTTAAGCTTACTGAGGAGATGGAATCCATTGATAAAGGGCTTCTTGAGGAGGCTGCTAGTGTTATTAAAGAACTGAATAAATCATTGGATCAATTTGAGCTGACTCAACTTCTTTCTGGTCCTTACGATAAAGAAGGTGCTGTTATCACTATTACAGCAGGTGCTGGAGGTACTGATGCACAGGATTGGGCGGACATGCTTCTTAGGATGTACATGAGATGGGGTGAGAAACAGAGATACAAAACCAGAGTGGTTGAGAAATCCCCTGGAGAAGAAGCTGGAATTAAATCTGCCACCATCGAAGTTGAAGGTCGTTATGCTTATGGGTATTTGTCTGGGGAGAAAGGAACACATCGCATTGTTCGGCAATCTCCTTTTAATGCCAAAGGTCTCCGTCAGACAAGCTTTTCTGGTATTGAAGTCATGCCTCTTCTTCCAGAAGAATCTATGGATGTTGAAATTCCTGAGGAGGACTTAGAAATTAGTTTTTCAAGAGCAGGTGGGAAAGGAGGTCAGAATGTGAACAAGGTTGAAACTGCAGTTCGGATCACACACATCCCAACCGGTGTCACTGTTCGCTGCACAGAGGAGAGATCCCAACTAGCAAATAAGATAAAGGCTTTGAGCCGTTTGAAAGCCAAGCTGTTGGTGATAGCTGAAGAGCAACGTGCATCTGAAATTAAGCAGATTCGGGGGGACGCAGTCAAGGCTGAATGGGGACAACAAATAAGGAACTATGTATTCCATCCATACAAACTGGTAAAAGATGTGAGAACAGGGTATGAAACGCCAGATATCACCTCTGTTATGGATGGCGAGTTGGACCCCTTCATTAAATCTTACCTCAAACACAAATACAGTATGACACTATCTTCAAGTGGGGTCAACTAG 1383 0.4447 MEVVSLPMCSTIITAAKSLRCKQQQSLLIPQNPTSSSSKHFPFLSYRTTPSRFPPPLVLAATPENQLSVGEGEGADTKEWALQDFYSLRRDVEITSQRAEEIRESSGLQLLEQEVADLEEKAADSSFWDNRGKAQETLSTLADVKDKIKLLTEFKTQVEDAETIVKLTEEMESIDKGLLEEAASVIKELNKSLDQFELTQLLSGPYDKEGAVITITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTRVVEKSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGIEVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETPDITSVMDGELDPFIKSYLKHKYSMTLSSSGVN* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00952 460 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 329 345 IPR000352 GO:0003747|GO:0006415
Rops8g00952 460 Gene3D Release factor 91 206 - -
Rops8g00952 460 Gene3D - 213 443 - -
Rops8g00952 460 NCBIfam peptide chain release factor 2 95 447 IPR004374 GO:0005737|GO:0006415|GO:0016149
Rops8g00952 460 SMART PCRF_a_2 166 278 IPR005139 GO:0006415
Rops8g00952 460 Hamap Peptide chain release factor 2 [prfB]. 84 450 IPR004374 GO:0005737|GO:0006415|GO:0016149
Rops8g00952 460 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 83 450 - -
Rops8g00952 460 SUPERFAMILY Release factor 111 451 IPR045853 -
Rops8g00952 460 Gene3D - 309 405 - -
Rops8g00952 460 Pfam PCRF domain 111 302 IPR005139 GO:0006415
Rops8g00952 460 Coils Coil 179 199 - -
Rops8g00952 460 Pfam RF-1 domain 313 422 IPR000352 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00952 Rops-Chr8 20583178 20589807 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00952 K02836 - gmx:100775574 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00952 8 20583178 20589807 Rops8g00952 8 20583178 20589807 ECH