Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01302 ATGGCTTCTGCTGCCACTAGCTTTGGAACAGCATGGTGTCTAAGAAGAGTAGCTCAGGGTTTTGCACTCTCTCCCACCAATGCCAACCTCTCTTTTCAAAGGACTCTTACCTCTCATCTTCTTTCCGCTTCTACTTCTTCAGCTTCAGGTGTAAGCCAGACAGTGCAAGCTTTAAAAGGAGAAGTTGACGAGTTACTCAAGGGAGTTGGAGAAAGAAGTGTAACAAAAGAAGTGAAGCATATTCTTGAGATGGCTAGACGAGCATCATTAAGACGAGAGGTTCTCCATACAGATTTTCTAACCCCTCCAGTGCTGAAGGAATCAATGCAAGTATTGGAAAAATTAGCAAACGTGAAAGCAATTGCTCAAGGAGGTTACCCACAAGCTGAACGTTGTCGGATTTCTGTTGGACATCCAGATGAACTGACAAGTGATCCAGATATTATTTCAGCATTGAGCATTACAGGGAACTTTCAGTTTGAACCTTGCTCTCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAACTTGGAGATATTATATTGCAGGGAGAACAGGGTGCTCAGGTACTTATTGTACCAGAACTCGTTGATTTTCTTATGTCGGCATTGGATAAGGTTCGTAATGTTCCTGTATCCTGCAGCAAGATACCATTAATTTCTCTTGATTATGAACCACCAAGTACAAAATCGTTCAAAACTATAGAAGCATCGCTTAGAGTTGATGCACTAGCTAGTGCAGGATTTAAGATTTCACGTTCAAAGCTAGTTGACATGATCAGCAATGGTGATGTGCGTGTTAACTGGATCCCTGTTACTACCAAAGGAAACACACTTAAGAGTGGAGATATTGTATCAGTTAGTGGAAAGGGAAGATTAAAGATAGGAGAAATAAACTCCACGAAGAAAGGAAAGTTTGCAGTGGAGCTTATTCGGTATTTGTAG 960 0.4156 MASAATSFGTAWCLRRVAQGFALSPTNANLSFQRTLTSHLLSASTSSASGVSQTVQALKGEVDELLKGVGERSVTKEVKHILEMARRASLRREVLHTDFLTPPVLKESMQVLEKLANVKAIAQGGYPQAERCRISVGHPDELTSDPDIISALSITGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQGEQGAQVLIVPELVDFLMSALDKVRNVPVSCSKIPLISLDYEPPSTKSFKTIEASLRVDALASAGFKISRSKLVDMISNGDVRVNWIPVTTKGNTLKSGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01302 319 NCBIfam photosystem II S4 domain protein 74 317 IPR017506 -
Rops7g01302 319 Gene3D - 239 295 IPR036986 GO:0003723
Rops7g01302 319 SMART s4_6 244 304 IPR002942 GO:0003723
Rops7g01302 319 Pfam Putative RNA-binding domain in YlmH 150 224 IPR040591 -
Rops7g01302 319 FunFam BnaA05g14690D protein 238 295 - -
Rops7g01302 319 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 74 286 - -
Rops7g01302 319 Pfam S4 domain 248 290 IPR002942 GO:0003723
Rops7g01302 319 Gene3D - 72 138 - -
Rops7g01302 319 SUPERFAMILY Alpha-L RNA-binding motif 103 307 - -
Rops7g01302 319 CDD S4 245 299 - -
Rops7g01302 319 ProSiteProfiles S4 RNA-binding domain profile. 244 304 - -
Rops7g01302 319 Gene3D - 145 227 IPR012677 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01302 - - gmx:100793767 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01302 7 17727164 17734315 Rops7g01302 7 17727164 17734315 ECH