Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00375 ATGATTTCGGGGGTGACGGGCATCTTCAATAGGGGGCATAAGATAAAAGGGACAGTGGTGTTGATGCGCAAGAATGTGTTGGACATCAATAGCTTAACCAGTGTTGGGGGGGTTATAGGTCAAGGTCTCGACATACTTGGTTCCTCAGTTGATGCTCTTACTGCATTCTTGGGCCGATCTGTGTCTCTTCAGTTGATTAGTTCAACCAAAGCTGATGCTCGCGGGAAAGGGAAACTTGGAAAGGCTACTTTTTTGGAGGGCATCATTTCTTCGTTGCCAACGTTGGGAGCAGGCCAATCTGCATTCAGAATTCATTTTGAATGGGATGATGACATGGGAATTCCTGGAGCATTTTATATCAAGAACTTTATGCAAACTGAGTTTTTCCTTGTGAGTTTGACTCTTGAAGACATTCCAAACCATGGAAGCATCTACTTTGTTTGCAACTCCTGGATTTATAATGCCAAACACCACAAACTTGACCGCATTTTCTTTGCCAACAAGACATATCTTCCAAGTGAAACACCAGCTCCATTAGCCCATTATAGAGAAGAAGAATTGCATAATTTAAGAGGAGATGGTACAGGAGAACGCAAAGAATGGGAAAGGATCTATGACTATGATGTCTACAATGATTTAGGAGATCCAGATAAAGATGAAAAGCATGCACGTCCTGTTCTTGGAGGGTCTAACACTTATCCTTATCCTCGTAGGTGTAGAACTGGCAGGAAAGCAACAAGAAAAGATCCTAACAGTGAGAGTAGGAGCAACGATGTTTATCTTCCAAGAGATGAAGCTTTTGGTCACTTGAAGTCTTCTGACTTTCTTACTTATGGATTGAAATCTGTATCTCAAAATGTGGTCCCAGCATTAGAATCTGTATTTTTTGATTTAAATTTCACACCGAATGAGTTTGATAGCTTTGATGAAGTTCATGGGCTCTATGAGGGTGGAATTAAGCTGCCAACAGATATACTTAGCAAGATTAGCCCATTACCTGTGCTCAAGGAAATCTTTAGAACTGATGGAGAACAGGCCCTCAAGTTTCCACCACCAAAAGTAATTCAAGCAAGTAGGTCTGCATGGATGACTGATGCAGAATTTGCAAGAGAAATGCTTGCTGGTGTAAATCCAAACTTGATTCGCTGTCTTCAAGAGTTCCCTCCACGAAGCAAGCTAGATAGTCAAGTCTACGGTGATCATACTAGTAAAATAACCGAAGAGCACCTGGAGCCTAACTTAGGAGGGCTCACTGTGCAGCAGGCAATTCAAAACAAGAGATTGTTCCTATTAGATCATCATGATTCAATCATGCCATATTTGAGGCGAATAAACTCAACTTCCACAAAGGCTTATGCTACCAGAACTATCCTTTTCTTGAAAGATGATGGGACTTTGAAGCCACTGGTCATAGAGTTGAGTTTGCCACATCCTCAGGGAGATCAATTAGGTGTTGTTAGCCATGTTTATCTGCCTGCCGAAGAAGGTGTTGAAAGCACTATCTGGCTGCTAGCCAAGGCTTATGTAATTGTGAATGACTCATGCTATCATCAACTTGTCAGCCATTGGTTAAATACTCATGCAGTTGTTGAGCCATTCGTCATAGCAACTAACAGACATCTCAGTGATCTTCACCCTATTTATAAACTTTTGTATCCTCACTATCGTGACACCATGAATATTAATGCCCTTGCTCGACAATCCTTGGTGAATGAAGGGGGTATTATAGAAAAATCATTCTTGTGGGGAAGGTATTCTATGGAAATGTCAGCTGTACTTTACAAGAATTGGGTTTTTCCAGAGCAAGCTTTGCCTGTTGATCTTATAAAAAGAGGAATGGCAATTGAGGATCCAGCTTCTCCTCATAGAATCAGACTTGTGATAGAGGACTATCCTTATGCCGTTGATGGACTTGAGATATGGAATACTATCAAGACATGGGTCCAAGACTATGTCTCCTTGTACTATACATCAGATGACACACTTAGACAAGATTCTGAACTCCAAGCTTGGTGGAAAGAGCTTGTAGAGGTGGGTCATGGTGACAAGAAAAATGAGCCATGGTGGCCTAAGATGCAAACTCGTGAAGAGCTAATTGAAGTTAGCACTATTGTCATATGGACTGCTTCAGCTCTTCATGCAGCTGTTAACTTTGGACAGTATCCTTATGGAGGTTTAATCTTAAACCGTCCAACACTAAGCAGGAGATTCATGCCTGAGAAAGGATCTCTTGAGTATGATGAGCTAGTCAAAAGTCCACAAAAGGCTTACTTGAAGACAATTACACCAAAGTTTAACACTCTTATTGATCTTTCTGTTATAGAAATCTTGTCAAGGCATGCTTCTGATGAGTTGTACCTTGGGGAGAGAGACAATCCAAATTGGACATCAGATACAAGAGCATTAGAGGCCTTTAAGAAGTTTGGTAACAAGTTGGCAGAAATTGAGCAAAAACTCACACAGAGAAACAATGATGAGAAACTGAGAAACCGTCATGGACCAGTTCAAATGCCTTATACTCTGCTTTATCCTTCTAGCAAGGAAGGATTGACTTTTAGAGGAATTCCCAACAGTATCTCTATCTGA 2586 0.4107 MISGVTGIFNRGHKIKGTVVLMRKNVLDINSLTSVGGVIGQGLDILGSSVDALTAFLGRSVSLQLISSTKADARGKGKLGKATFLEGIISSLPTLGAGQSAFRIHFEWDDDMGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIYFVCNSWIYNAKHHKLDRIFFANKTYLPSETPAPLAHYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPDKDEKHARPVLGGSNTYPYPRRCRTGRKATRKDPNSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVVPALESVFFDLNFTPNEFDSFDEVHGLYEGGIKLPTDILSKISPLPVLKEIFRTDGEQALKFPPPKVIQASRSAWMTDAEFAREMLAGVNPNLIRCLQEFPPRSKLDSQVYGDHTSKITEEHLEPNLGGLTVQQAIQNKRLFLLDHHDSIMPYLRRINSTSTKAYATRTILFLKDDGTLKPLVIELSLPHPQGDQLGVVSHVYLPAEEGVESTIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSDLHPIYKLLYPHYRDTMNINALARQSLVNEGGIIEKSFLWGRYSMEMSAVLYKNWVFPEQALPVDLIKRGMAIEDPASPHRIRLVIEDYPYAVDGLEIWNTIKTWVQDYVSLYYTSDDTLRQDSELQAWWKELVEVGHGDKKNEPWWPKMQTREELIEVSTIVIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSLEYDELVKSPQKAYLKTITPKFNTLIDLSVIEILSRHASDELYLGERDNPNWTSDTRALEAFKKFGNKLAEIEQKLTQRNNDEKLRNRHGPVQMPYTLLYPSSKEGLTFRGIPNSISI* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00375 861 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Rops7g00375 861 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Rops7g00375 861 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Rops7g00375 861 FunFam Lipoxygenase 171 270 - -
Rops7g00375 861 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 861 IPR013819 GO:0016702|GO:0046872
Rops7g00375 861 Pfam PLAT/LH2 domain 68 165 IPR001024 GO:0005515
Rops7g00375 861 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Rops7g00375 861 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Rops7g00375 861 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Rops7g00375 861 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Rops7g00375 861 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Rops7g00375 861 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Rops7g00375 861 PRINTS Plant lipoxygenase signature 302 323 IPR001246 GO:0016491
Rops7g00375 861 PRINTS Plant lipoxygenase signature 347 363 IPR001246 GO:0016491
Rops7g00375 861 PRINTS Plant lipoxygenase signature 386 405 IPR001246 GO:0016491
Rops7g00375 861 FunFam Lipoxygenase 361 494 - -
Rops7g00375 861 Gene3D - 271 359 IPR027433 -
Rops7g00375 861 FunFam Lipoxygenase 496 860 - -
Rops7g00375 861 SMART LH2_4 13 167 IPR001024 GO:0005515
Rops7g00375 861 PANTHER LIPOXYGENASE 13 861 IPR000907 GO:0016702|GO:0034440|GO:0046872
Rops7g00375 861 SUPERFAMILY Lipoxigenase 171 861 IPR036226 -
Rops7g00375 861 Pfam Lipoxygenase 179 844 IPR013819 GO:0016702|GO:0046872
Rops7g00375 861 Gene3D - 360 494 - -
Rops7g00375 861 ProSiteProfiles PLAT domain profile. 39 166 IPR001024 GO:0005515
Rops7g00375 861 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 170 IPR036392 GO:0005515
Rops7g00375 861 Gene3D - 495 860 - -
Rops7g00375 861 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Rops7g00375 861 Gene3D - 171 270 - -
Rops7g00375 861 CDD PLAT_LH2 13 167 IPR042057 -
Rops7g00375 861 Gene3D PLAT/LH2 domain 4 170 - -
Rops7g00375 861 MobiDBLite consensus disorder prediction 245 260 - -
Rops7g00375 861 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Rops7g00375 861 MobiDBLite consensus disorder prediction 216 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00375 Rops-Chr7 4832442 4836523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00375 14 861 Acyl Lipid Metabolism Gene Families AT1G55020 60.349 0.0 1078
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00375 K15718 - gmx:547869 1544.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00375 7 4832442 4836523 Rops4g01914 4 44364447 44369382 PCT