Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03423 ATGGCGGCGGCGGCGACTACTACCACTTCATGGCAGCCACAGGAACAAGGGTTCAAGGAGATCTGCGGCCTCCTCGAGCAGCAGATTTCTCATTCATCTTCAGCTGATAAGGCCCAGATTTGGCAACACCTTCAGCACTATTCTCAACTCCCTGACTTCAACAATTACCTTGCTTTTATCTTTTCCCATGCTGAGGGAACATCAGTGGAGGTTCGGCAGGCTGCAGGTTTATATCTGAAGAATAACCTTAGAAGCGCATATAATTCTATGCTGCCTGCATACCAACAATATGTGAAATCAGAGTTGCTGCCTTGTATGGGTGCAGCAGATAAGCACATAAGGTCTACAGCAGGAACTATTATTAGTGTTGTTGTTCAAATAGGAGGAATTTTGGGGTGGCCTGAATTGTTGCAAGCCCTAGTAAATTGCTTGGACAGTAATGATCTAAATCACATGGAAGGTGCAATGGATGCATTATCCAAGATTTGTGAGGATATTCCGCAATATCTTGACTCTGATGTACCAGGGTTAGCAGAGCGCCCTATTAACATATTTCTTCCCAGATTATTTCGGTTTTTCCAATCACCTCATGCTTCACTAAGAAAGCTATCACTGGGTTCTGTAAATCAATACATCATGTTAATGCCTTCTGCCTTATACGTATCCATGGATCAATATCTTCAAGGTTTGTTTATTCTTGCAAATGACCCCACTGCAGAAGTGCGGAAGTTGGTTTGTGCAGCATTCGTTCAGCTAATTGAAGTCCGGCCGTCTTTCTTGGAGCCACATCTAAGGAATGTGATTGAGTACATGTTACAAGTCAACAAGGACACAGATGATGAAGTAGCCCTGGAAGCCTGTGAATTTTGGTCTGCATATTGTGATGCTCAACTGCCTCCTGAAAACTTAAGAGAATTCTTGCCTCGTCTTATTCCAGTATTGTTGTCAAATATGGCTTATGCTGATGATGATGAATCTCTTATTGAAGCCGAGGAAGATGGTTCTCAACCTGATCGAGATCAGGATCTCAAACCTCGATTTCATGTGTCAAGGTTTCATGGATCAGATGAAGTGGAAGATGACGATGACGATGTTGTCAACACATGGAATTTACGGAAATGCAGTGCAGCTGCTCTAGATATTCTCTCAAATGTGTTTGGAGATGAGATCCTTCCAACTCTGATGCCCATTGTCCAGGCCAAGTTGTCAGCTGGTGGGGATGATGCTTGGAAAGAAAGGGAAGCTGCTGTCTTGGCTCTTGGTGCCATAGGGGAGGGTTGCATCAACGGTCTTTATCCTCATCTGTCGGAGATTGTGACATTTCTTATCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACACTGTCTCGGTTTAGCAAATTTATTGTTCAGGGTCTTGGGCATCCTAAAGGCTATGAACAATTTGATAATGTTCTTATGGGTCTACTACGAAGAATTTTGGATGATAATAAGCGCGTGCAAGAGGCTGCTTGTTCAGCTTTTGCAACACTGGAAGAGGAGGCTGCTGAAGAGTTGGCACCGCGCTTGGAAATCATATTAAAGCACCTGATTACTGCATTTGGGAAATATCAGAGACGAAACCTCAGAATTGTATATGACGCAATTGGAACTCTAGCTGAAGCTGTTGGAGGAGAGCTGAATCAGCCTGTTTATCTTGACATCCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCGAATTCAGACAAAGATCTCTTTCCACTCCTGGAATGTTTTACATCGATAGCACATGCATTGGGTACTGGATTTACTCAATTTGCTGAACCTGTATTTAGGAGGTGCATAAATTTAATCCAGACCCAACAATTTGCTAAGGCTGATCCTGTTGCAGCTGGGGTTCAGTATGACAAGGAGTTCATTGTGTGCTCGCTTGATCTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGAATAGAGAGTTTGGTTTCACAATGTTCTTTGAGGGACCTACTTCTGCATTGTTGTGTGGATGATGCTCCTGATGTTCGACAAAGTGCCTTTGCCTTAATGGGAGATCTTGCACGAGTGTGCCCGATTCATTTGCACCCTCGTTTGTCAGAGTTTCTTGAGGCTGCAGCCAAGCAACTGGAAATTTCTAAGGTAAAGGAGGCTATTTCAGTGGCAAATAATGCATGCTGGGCAATTGGAGAATTAGCAGTTAAGGTCCGTCAAGAAATTTCTCCCATTGTTATAACTGTAATTTCATGCCTGGTCCCAATTCTTCAGCATGCAGAGGGACTCAATAAGTCACTTATAGAAAATAGTGCAATAACACTGGGGAGGATTGCATGGGTCTGTCCCGACCTTGTATCACCACATATGGAGCATTTCATGCAATCTTGGTGCACTGCATTGTCGATGATACGAGATGATATTGAGAAAGAGGACGCTTTTAGAGGTCTATGTGCTATGGTCAAAGCTAATCCTTCTGGAGCTCTAAGTTCGCTTGCTTACATGTGTAAAGCCATTGCAAGTTGGCATGAAATAAGGAGTGAAGATTTACACAATGAAGTCTGCCAGGTCTTGCATGGGTATAAACAGATGCTGCGCAATGGAGCATGGGACCAGTGTATGTCTGCTTTGGAGCCGCCAGTAAAAGAAAAGCTTTCAAAATATCAAGTATAA 2688 0.4345 MAAAATTTTSWQPQEQGFKEICGLLEQQISHSSSADKAQIWQHLQHYSQLPDFNNYLAFIFSHAEGTSVEVRQAAGLYLKNNLRSAYNSMLPAYQQYVKSELLPCMGAADKHIRSTAGTIISVVVQIGGILGWPELLQALVNCLDSNDLNHMEGAMDALSKICEDIPQYLDSDVPGLAERPINIFLPRLFRFFQSPHASLRKLSLGSVNQYIMLMPSALYVSMDQYLQGLFILANDPTAEVRKLVCAAFVQLIEVRPSFLEPHLRNVIEYMLQVNKDTDDEVALEACEFWSAYCDAQLPPENLREFLPRLIPVLLSNMAYADDDESLIEAEEDGSQPDRDQDLKPRFHVSRFHGSDEVEDDDDDVVNTWNLRKCSAAALDILSNVFGDEILPTLMPIVQAKLSAGGDDAWKEREAAVLALGAIGEGCINGLYPHLSEIVTFLIPLLDDKFPLIRSISCWTLSRFSKFIVQGLGHPKGYEQFDNVLMGLLRRILDDNKRVQEAACSAFATLEEEAAEELAPRLEIILKHLITAFGKYQRRNLRIVYDAIGTLAEAVGGELNQPVYLDILMPPLIEKWQQLSNSDKDLFPLLECFTSIAHALGTGFTQFAEPVFRRCINLIQTQQFAKADPVAAGVQYDKEFIVCSLDLLSGLAEGLGSGIESLVSQCSLRDLLLHCCVDDAPDVRQSAFALMGDLARVCPIHLHPRLSEFLEAAAKQLEISKVKEAISVANNACWAIGELAVKVRQEISPIVITVISCLVPILQHAEGLNKSLIENSAITLGRIAWVCPDLVSPHMEHFMQSWCTALSMIRDDIEKEDAFRGLCAMVKANPSGALSSLAYMCKAIASWHEIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKEKLSKYQV* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03423 895 PANTHER IMPORTIN BETA 20 871 IPR040122 GO:0006606
Rops6g03423 895 SMART IBN_N_2 40 108 IPR001494 GO:0006886|GO:0031267
Rops6g03423 895 Pfam HEAT-like repeat 410 463 - -
Rops6g03423 895 Gene3D - 8 895 IPR011989 -
Rops6g03423 895 SUPERFAMILY ARM repeat 11 887 IPR016024 -
Rops6g03423 895 FunFam Transportin-1 8 895 - -
Rops6g03423 895 Pfam Importin-beta N-terminal domain 41 107 IPR001494 GO:0006886|GO:0031267
Rops6g03423 895 ProSiteProfiles Importin-beta N-terminal domain profile. 40 108 IPR001494 GO:0006886|GO:0031267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03423 Rops-Chr6 58872691 58890090 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03423 K18752 - gmx:100792702 1686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03423 6 58872691 58890090 Rops6g03423 6 58872691 58890090 ECH