Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03405 ATGGTGGTGGTAGTGGAGTTGCGGTGGCAGACTAGCAGTGGTGGAGTACAGATCGGTGGGAGCAGATCAGTGAAGATGAGATCAGTGAATCCTAGCAGCGGAGGAGTACAGATCACGAGCCACCCACACACACAGAAAAACACAATAATAGGAACAATAGTAGTTGAAGACATTGTGATTGTGGGAGCTGGAATTGCTGGCCTCACAACATCCTTAGGACTTCACAGGTTGGGTGTGCAAAGTTTGGTGTTAGAATCTGCAGATACTTTAAGGGTCACAGGGTATGCTTTAACAGCATGGACAAATGCTTGGAGAGCCTTGGATGCTGTTGGCGTCGGAGGCATCCTTCGCCAGCATCATGTGCAGCTAAATGATGGAGCCTATGAAGTTCGTTGTGTTGGAAGGCAATTAATGTTGGAAGCTCTTGCCAATGAGCTTCCACGTGGCACCATCAGGTATTCGTCAAAGATTGTTGCTATTGAGGAATCTGAATTCTCTAAGATAGTCCATCTTGCTGACGGAACAACCATAAAAAACAAAGGCTTCAAGGAGACCTCTTTTACTGAGAGATATGTAATCAGGGGTTTCTCAATGTTGAAAGGCAATCATGGGCTTGAGCCTAGATTCATGCACTTCTTTGGGAAAGGTTTTCGATCTGGTATACTTCCTTGTGATGACAAGACCATTTACTGGTTTTTCACTTGGACTCCCACTAGTCAAGGTGAATTCTTTGTTTCTGCCATTGATTACTTTTACCAAGGGTTTCCATTTGAGGAAAAGAAGAAAAAGCAAAAGGGAATTCCCAAAGTTGAGCCCAATAGCGATCTGCAGCATACTGTTGAGGTCAAATCTCCTGATCAAATTGAGATAATAAGAGAAACTTGTCGGGAATTGGAATGCAGGAATGTCACCTTTTCTATGATCACTGGGCAACAAACATCAAGCTTGTCTTTCAAGGGTACCGAAAAACATGGATCCTGTGAAGTTCGTTGTGTTAGAAGGCAGTTAATGTTAGAAGCCCTTGCCAAGGAGCTTCCAAGTGGCACCATCAAGTATTCATCAAAGATTGTTGCTATTGAGGAATCTGGCTTCTTTAAGATAGTCCATCTTGCTGACGGAACAACCATCAAAACTAAGGTATTGATTGGGTGTGATGGAATAAACTCTGTGGTGGCAAAGTGGCTAGGCTTCAAGGAGACCTCTTTTACTGGGAGATATGTAATAAGGGGTTTCTCAATGTTGAAGAGAAATCACGGGCTTGAGCCGAGATTCATGCACTTCTTTGGGAAAGGTTTTCGATCTGGTATACTTCCTTGTGATGACAAAACCATTTACTGGTTTTTCACTTGGACTCCCACTAGTCAAGAGAAGGAGCTAACACAGAAACCAACTATAATGAAGCAATTTGTGTTGAGCAAGCTTGAGAAGATGCCAAGTAATATCAAATCCTTCATTGAAAACACCGAGTAG 1470 0.4306 MVVVVELRWQTSSGGVQIGGSRSVKMRSVNPSSGGVQITSHPHTQKNTIIGTIVVEDIVIVGAGIAGLTTSLGLHRLGVQSLVLESADTLRVTGYALTAWTNAWRALDAVGVGGILRQHHVQLNDGAYEVRCVGRQLMLEALANELPRGTIRYSSKIVAIEESEFSKIVHLADGTTIKNKGFKETSFTERYVIRGFSMLKGNHGLEPRFMHFFGKGFRSGILPCDDKTIYWFFTWTPTSQGEFFVSAIDYFYQGFPFEEKKKKQKGIPKVEPNSDLQHTVEVKSPDQIEIIRETCRELECRNVTFSMITGQQTSSLSFKGTEKHGSCEVRCVRRQLMLEALAKELPSGTIKYSSKIVAIEESGFFKIVHLADGTTIKTKVLIGCDGINSVVAKWLGFKETSFTGRYVIRGFSMLKRNHGLEPRFMHFFGKGFRSGILPCDDKTIYWFFTWTPTSQEKELTQKPTIMKQFVLSKLEKMPSNIKSFIENTE* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03405 489 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 291 489 IPR044560 -
Rops6g03405 489 Pfam Lycopene cyclase protein 57 178 - -
Rops6g03405 489 Gene3D - 57 181 IPR036188 -
Rops6g03405 489 Gene3D - 285 489 IPR036188 -
Rops6g03405 489 Pfam FAD binding domain 374 469 IPR002938 GO:0071949
Rops6g03405 489 SUPERFAMILY FAD/NAD(P)-binding domain 57 410 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03405 Rops-Chr6 58655668 58670029 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03405 309 489 Miscellaneous Gene Families AT5G05320 51.381 1.98e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03405 - - tpra:123902776 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03405 6 58655668 58670029 Rops6g03405 6 58655668 58670029 ECH