Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03381 ATGGCGAGGCGATCGTACAAGACTGAGTTGGGATGTATAGCCTGCCAGGATTTGGGGGAATTCGGAGCCGGAAAACCCGGTTGGCTGGCCGACAACCCCAATCTCCTCCTCGCCGTCGACACCCACTCTCTCCTCCTCGCCAACCGCTCCACCATCCTCGTCCTCGCTTGGTCCGATCCCGACGGATCTCCGGTCAAGATCCGACCCGAATTGTCCCCCATCGAGGCCGAACACATCTCCGCCGTCGAGTGGTTGGTCTTCGACGACATTCGCGTCATCGTCGCCGGCACCTCCGGTGGACACTTGCTCATTTACTCATTGCGCGGTGAATTGATTCATAGGCAGATGATTTATCCTGGGCGTGTTTTGAAGTTAAGAGTTCGTGGAACAAAGAAAGATTTGATTCAAGATACTTCTTCGGAAGAGTTTTGTCTCGTTATGCCAGGTGTAATTGCCCGTTTTGATGGCTCTGATATTCAGAATATGCTGCATAAATGGTTTGAAGAAGCACAAGATCAGTTTTGGAATCAAAAGCCAAAGGGCCAAGATTCAGAGGATTTCGAAAATTCTCATGTAAGATTACCTTACCAGTTGTGGAATATTGGTAAGTATGGCACTTGTGCTGATGCGGCAGTCACTGGCATAATGCCTCCACCACTGATGGAACAGCAGTCAAGTCAACGTTATTATTGTGCAGTGGCTGTTGGAGAGGATGCTGTGATTTCAGCTTACAGACTCTCTGAGGACAAAGGCAGGTCTTTAGTGGGAGCTATCTTGTCTAAAGTTGTACCTGCAACATTTTCCACAATAGCTTCTTTTTCTAAATTGATTTGGCGGAGTGATCAGACTTCTCCAAAGAAATCTCCAATGAAATCAGATCAGAAGCCTCAGCCATTTGCTAAAGCTTCACCTTTGACATGTTTAAAGGATCACCCTAGGAAAGGTGAGAAGCTTACCTTATCACCAAGTGGTACATTGGCTGCTATAACAGATTCACTTGGTCGCATATTGCTGCTTGATACCCAAGCACTTGTGGTGGTGCGCTTATGGAAGGGATATAGGGATGCCAGTTGCCTATTCATGGAGATGTTGGTAAATAAAGATATTGCATCATCAAGCTCTAATTTTTATGAACCAATGAAGAGTGATTACTGCTTGTGTTTGGCTATTCATGCACCTCGAAAAGGAATTATCGAGATCTGGCAAATGAGAACCGGACCACGTCTTAGAACGATTCCATGTGCAAAAGTGAAGAGCAAACCAAGCAAGCGCCTTTTTGTGATTTCATCGAATCGAATCGAATCCAAGATGTTTCTCACAAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCCCCTGAAGGCCGTTTGTTTCAGGTTGAATATGCAATCGAAGCCATCAAGCTGGGATCAACTGCAATTGGGTTGAAGACGAAAGAGGGTGTTGTCCTTGCAGTTGAAAAGCGTATCACTTCGCCATTGCTGGAGCCTAGCAGTGTGGAGAAAATTATGGAAATTGATGAGCATATAGGTTGTGCAATGAGTGGATTAATTGCTGATGCTCGAACACTTGTTGAGCATGCACGAGTGGAAACTCAGAATCATAGGTTCTCCTACGGTGAACCAATGACTGTGGAGTCCACAACCCAAGCTCTTTGTGATCTAGCCTTGCGTTTTGGTGAAGGTGATGAAGAATCCATGTCTCGACCATTTGGAGTGTCTCTCCTCATTGCTGGTCAGGATGAGAATGGACCTAGTCTGTATCACACTGATCCATCTGGCACATTTTGGCAATGCAATGCAAAAGCTATTGGTTCAGGATCTGAAGGTGCAGACAGCTCCCTGCAAGAACAATACAACAAGGACCTAACTCTTCAAGAAGCTGAGACTATTGCTTTATCCATTCTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAATGTTGACATTGCAAAGGTTGCTCCAACATATCATCTTTATACCCCATCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA 2022 0.458 MARRSYKTELGCIACQDLGEFGAGKPGWLADNPNLLLAVDTHSLLLANRSTILVLAWSDPDGSPVKIRPELSPIEAEHISAVEWLVFDDIRVIVAGTSGGHLLIYSLRGELIHRQMIYPGRVLKLRVRGTKKDLIQDTSSEEFCLVMPGVIARFDGSDIQNMLHKWFEEAQDQFWNQKPKGQDSEDFENSHVRLPYQLWNIGKYGTCADAAVTGIMPPPLMEQQSSQRYYCAVAVGEDAVISAYRLSEDKGRSLVGAILSKVVPATFSTIASFSKLIWRSDQTSPKKSPMKSDQKPQPFAKASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCLFMEMLVNKDIASSSSNFYEPMKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTIPCAKVKSKPSKRLFVISSNRIESKMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGQDENGPSLYHTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVISRL* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03381 673 CDD proteasome_alpha_type_5 444 654 IPR033812 GO:0019773|GO:0043161
Rops6g03381 673 PANTHER RAB3-GAP REGULATORY DOMAIN 2 431 IPR026059 GO:0043087
Rops6g03381 673 ProSiteProfiles Proteasome alpha-type subunit profile. 459 670 IPR023332 -
Rops6g03381 673 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 437 673 IPR029055 -
Rops6g03381 673 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 443 670 IPR029055 -
Rops6g03381 673 ProSitePatterns Proteasome alpha-type subunits signature. 444 466 IPR000426 GO:0006511|GO:0019773
Rops6g03381 673 Pfam Rab3 GTPase-activating protein regulatory subunit N-terminus 28 416 IPR032839 -
Rops6g03381 673 Pfam Proteasome subunit A N-terminal signature 444 466 IPR000426 GO:0006511|GO:0019773
Rops6g03381 673 FunFam Proteasome subunit alpha type 437 673 - -
Rops6g03381 673 SMART Proteasome_A_N_2 444 466 IPR000426 GO:0006511|GO:0019773
Rops6g03381 673 MobiDBLite consensus disorder prediction 282 305 - -
Rops6g03381 673 Pfam Proteasome subunit 467 654 IPR001353 GO:0005839|GO:0051603
Rops6g03381 673 SUPERFAMILY WD40 repeat-like 42 429 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03381 Rops-Chr6 58337405 58349503 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03381 K19937 - gmx:100796204 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03381 6 58337405 58349503 Rops6g03381 6 58337405 58349503 ECH