Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03148 ATGCAAAGCCTTGTATTTCTTTGCCTAACTATTATTTGCCTTTCTCCATTTTACTTTCACACTAACAGGAACAGTTTCGGTGTGCAAGCCCTCACTTCATCCTCAGAAGTTGCAGCCCTGAAAGCCTTCAAAGCCTCGATCAAACCCTCTTCAATCTCACCATGGTCATGCCTAGCATCATGGAACTTCACCATTGATCCATGTTCAATCCCTCGCCGAACCTACTTCATTTGTGGCCTAACATGCACCCCCGATTCCACTCACATCAACCAAATCACACTTGACCCAGCAGGGTACTCAGGTTCACTCACTTCTCTTATCTCTCAACTCACCCATCTCACCACACTAGACCTTGCTGACAACTCCTTCTTTGGCCCAATCCCCTCTTCAATTTCTTCCCTTTCCAACCTCCAAACCTTAACCCTCCGATCCAATTCCTTCTCAGGTTCAATCCCTCCCTCCATAACCACCCTCAAATCCCTCCAATCATTAGACCTTTCACACAATTCCCTATCTGGGTCTCTCCCAAACTCATTGAATTCCCTCATCAACCTCCGCAGAATCGATCTCAGCTTCAACAAATTAACAGGCTCAATCCCTAGACTACCACCCAACTTGCTAGAAATCGCAATCAAGGCCAATTCTTTATCTGGGCCTCTCCAAAAAACAACCTTTGAAGGGTTAAACCAATTGGAAGTGGTGGAACTAAGCGAGAACACACTCACCGGAACAATTGAATCATGGTTCTTTCTTTTGCCATCGTTGCAACAAGTGGATTTAGCAAACAACAGCTTCACCAGCGTTCAGATCTCAAGACCCACGCGTGAAAGCAATCTGGTGGCATTGAACCTCGGATTTAACAGAATTCAAGGTTACGCGCCCGCGAATCTCGCAGCGTATCCGTCACTGTCGTTCCTGTCGATTCGTCACAACTCGCTACGTGGCACGATCCCATTGGAGTATGGTCATATCAAGTCAATGAAGAGGTTGTTCTTGGACGGAAACTTCCTCATCGGGAAACCACCGCCGGGGTTGTTCGCCGCCGGCACGACGGTTTCCGGCAGCTTGGGGGATAATTGTCTTCAAGGTTGTCCAGTGTCGGCGCAGCTGTGCATGCCCGCACAGAAATCCGCCTCTGTTTGCAAACAAGCCTATCACCGTGGAAGATCTTAG 1173 0.4808 MQSLVFLCLTIICLSPFYFHTNRNSFGVQALTSSSEVAALKAFKASIKPSSISPWSCLASWNFTIDPCSIPRRTYFICGLTCTPDSTHINQITLDPAGYSGSLTSLISQLTHLTTLDLADNSFFGPIPSSISSLSNLQTLTLRSNSFSGSIPPSITTLKSLQSLDLSHNSLSGSLPNSLNSLINLRRIDLSFNKLTGSIPRLPPNLLEIAIKANSLSGPLQKTTFEGLNQLEVVELSENTLTGTIESWFFLLPSLQQVDLANNSFTSVQISRPTRESNLVALNLGFNRIQGYAPANLAAYPSLSFLSIRHNSLRGTIPLEYGHIKSMKRLFLDGNFLIGKPPPGLFAAGTTVSGSLGDNCLQGCPVSAQLCMPAQKSASVCKQAYHRGRS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03148 390 PRINTS Leucine-rich repeat signature 161 174 - -
Rops6g03148 390 PRINTS Leucine-rich repeat signature 182 195 - -
Rops6g03148 390 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
Rops6g03148 390 Pfam Leucine Rich Repeat 112 134 IPR001611 GO:0005515
Rops6g03148 390 Pfam Leucine rich repeat 135 195 IPR001611 GO:0005515
Rops6g03148 390 Pfam Leucine rich repeat 204 264 IPR001611 GO:0005515
Rops6g03148 390 FunFam Nuclear pore complex protein NUP107 33 201 - -
Rops6g03148 390 Gene3D Ribonuclease Inhibitor 33 202 IPR032675 -
Rops6g03148 390 ProSiteProfiles Leucine-rich repeat profile. 160 182 IPR001611 GO:0005515
Rops6g03148 390 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 11 204 - -
Rops6g03148 390 Gene3D Ribonuclease Inhibitor 203 372 IPR032675 -
Rops6g03148 390 SMART LRR_typ_2 158 181 IPR003591 -
Rops6g03148 390 SMART LRR_typ_2 182 209 IPR003591 -
Rops6g03148 390 SMART LRR_typ_2 252 273 IPR003591 -
Rops6g03148 390 SMART LRR_typ_2 110 134 IPR003591 -
Rops6g03148 390 SUPERFAMILY L domain-like 76 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03148 Rops-Chr6 54956290 54957837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03148 99 370 Receptor kinase-like Gene Family AT1G17750 29.530 3.05e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03148 - - lja:Lj5g3v2113590.1 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03148 6 54956290 54957837 Rops6g03148 6 54956290 54957837 ECH