Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03048 ATGGCAGAGCCTCAAAGGGCACAATATGGAGGAGGCATAATCGTAAACCCAGGATTTGATCACAACATAGAGGGTTGGACAGTATTTGGAAAAGGAGCAATTGAAGAACAAATATCAAATGAAGGCAATAGATTCATTGTTGCCCGCAACAGAACACAACCATTAGATAGTTTCTCACAGAAAGTCCAACTTCAGAAAGGAATGATATATAGCATTTCTGCTTGGTTTCAGCTCAGTGAAGGAAGTGACACTGTGTCAGTTATATTTAAAATAAATGGAAGTGAACTGATACGAGGTGGCCATGTGATAGCAAAGCATGGATGCTGGACTGTGCTAAAAGGTGGCATATTTGCAATCTTCTCAAGCCCGGCTGAGATTCTCTTTGAGAGCAAGAATCCAACTGTGGAAATATGGGCTGATAGTCTATCCTTACAACCATTCACCAAAAAGCAATGGAGATCACACCAAGACCACAGCATTGAGAGGGTACGTAAGAGCAAGGTGAGATTCCAAGTAACTCATATAAATGAAACAGCAGTGGAAGGAGCTACAGTCACCATCAAACAAACAAAGGCAGGCTTCCCATTTGGATGTGGAATAAACCATCATATCCTCACAAACAGTGGATACCAGGAATGGTTTTTGTCAAGATTCAAATACACAACTTTCACTAATGAGATGAAGTGGTATAGTACAGAGAAAGATCAAGGCAAGGAAAACTATACTATTGCAGATGCCATGATGAAATTGGCCACAGAGAATGGCATTTCTGTCAGAGGTCACAACATTTTCTGGGACGATCCAAAATATCAGCCTGAATGGGTTAAATGCCTATCTCCTGAGGATTTAAGAGAAGCAGCAGCACAAAGAATGAAATCTGTGGTTTCAAGATATAAAGAAAAACTGATTGCTTGGGATGTGGTGAATGAGAATGTCCACTTCCACTTTTATGAGGATAAACTTGGTGAAAATGCTTCTGCAGTATATTATTCAACAGCTTACCAGATGGATCCAAAAACCACTATGTTCCTTAATGAGTATAACACCATTGAATATAGTGGGGATGAGTTTGTAAGCCCAACCAATTATATGAAGAAACTTAAGGAGATTCTGCAATTTCCAGGAATTGAAGGAATATCCATGGCAATAGGATTGCAAGGCCATTTTGCTGAAGGCCAGCCAAATCTTGCTTACATGAGGTCAGGTTTAGATCTTCTTGGTGCAACTGGACTTCCAATATGGCTCACTGAAGCCAGTGTGGATTTAGGCCCAAATCAGGCAGAGTACTTTGAAGAGATACTAAGAGAGGGTTACTCTCACCCTGCAGTTCAAGGGATTATAATGTTTGCAGGTCCAGCACAAGCTGGTTTCAACAAGACCACCCTTTCAGATGAACGTTTCCAAAATACTCCAATTGGAGACGTTGTGGACAAGCTGATTCGTGAGTGGGGAACTGAGCCCAGCAAAGTCGTAGCTGATAGCAGAGGATTTGTAGATATTTCACTGCATCATGGAGATTATGATGTAACTGTTACACATCCTCTGACCAACTTCTCCAAAACATTGAATGTAAGTGTAAGGAAAGGATTTTCACAGGACACCATCCATGTGAAAATGCATGCTTGA 1626 0.4096 MAEPQRAQYGGGIIVNPGFDHNIEGWTVFGKGAIEEQISNEGNRFIVARNRTQPLDSFSQKVQLQKGMIYSISAWFQLSEGSDTVSVIFKINGSELIRGGHVIAKHGCWTVLKGGIFAIFSSPAEILFESKNPTVEIWADSLSLQPFTKKQWRSHQDHSIERVRKSKVRFQVTHINETAVEGATVTIKQTKAGFPFGCGINHHILTNSGYQEWFLSRFKYTTFTNEMKWYSTEKDQGKENYTIADAMMKLATENGISVRGHNIFWDDPKYQPEWVKCLSPEDLREAAAQRMKSVVSRYKEKLIAWDVVNENVHFHFYEDKLGENASAVYYSTAYQMDPKTTMFLNEYNTIEYSGDEFVSPTNYMKKLKEILQFPGIEGISMAIGLQGHFAEGQPNLAYMRSGLDLLGATGLPIWLTEASVDLGPNQAEYFEEILREGYSHPAVQGIIMFAGPAQAGFNKTTLSDERFQNTPIGDVVDKLIREWGTEPSKVVADSRGFVDISLHHGDYDVTVTHPLTNFSKTLNVSVRKGFSQDTIHVKMHA* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03048 541 Gene3D - 2 147 - -
Rops6g03048 541 Pfam Carbohydrate binding domain 12 93 IPR003305 GO:0016798
Rops6g03048 541 SUPERFAMILY (Trans)glycosidases 180 486 IPR017853 -
Rops6g03048 541 PANTHER GLYCOSYL HYDROLASE 2 528 IPR044846 GO:0004553|GO:0005975
Rops6g03048 541 Pfam Glycosyl hydrolase family 10 190 427 IPR001000 GO:0004553|GO:0005975
Rops6g03048 541 SUPERFAMILY Galactose-binding domain-like 10 146 IPR008979 -
Rops6g03048 541 SMART glyco_10 227 479 IPR001000 GO:0004553|GO:0005975
Rops6g03048 541 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 181 479 IPR001000 GO:0004553|GO:0005975
Rops6g03048 541 Gene3D Glycosidases 182 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03048 Rops-Chr6 53643486 53646694 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03048 1 526 Glycoside Hydrolase AT4G33840 50.095 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03048 - - gmx:100777980 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03048 6 53643486 53646694 Rops6g03048 6 53643486 53646694 ECH