Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03034 ATGTTGCAAACCCTAGGTTTTGTAAGCCTCCGCTTCGTGAATCGCTCATGGTTCCGAAGCTTGAGCGTGCGTGCATTCTCCTCCGATTATGGAGACCAATCACGTGGTGGCCTCCCTCGCTTCTACTCCGAAACTCTTCCTCCTTCCAAGGGTAATGTTGTTCGTGTACAAGGTGATGAATTCTGGCATATGACAAAAGTATTGAGGTTGAACACCAATGATAGGGTACAACTCTTCAATGGGAAAGGAGGTCTGGTAGAAGGATGCATACAGAACATTGACCGCACTGGACTTGATTTTGTTGCATTGACTGATCTGAAGTTAATACCTCCACAGAATACGCAATTGCATGTATTTTCTGGTTTTGGTACTTTGAAGGGTGGCCGTGCTGACTGGCTTGTAGAGAAGTGTACAGAACTTGGAGCCAATAGTGTAACTCCTCTATTGACTGAACATTCTCCATCAATCTCAGAAAGTCGGGTGGACAGATTGGAACGAGTCATTTTAGCAGCATCCAAACAATGTCAACGACTGCATGAAATGATCCTGAAACCTCCTATAGAGATTGATGATCTTTTGCATCTTGTTGCACAATCAAAGCTATCTCTTGTTGGAACAGCAAATGCAACTCCTGTTCTTAGTGCATTGTCATCATTGGAAAAGGAAACTAGTGGCTTTATCATAATTGGACCAGAAGGCGACTTCACTGAGAAAGAAGTGAGCACGCTGATGGAAGCAGGCGCTACAGCTGTCAGTCTTGGGCCTCATCGTCTTCGGGTTGAAACTGCCACAATAGCACTTCTGTCAACTGTCATGTTATGTCGTAGTGGTGCTGGTGGTAATCGTAATAGTGGTGGTCGTGGTGGTAATAGTAGTGGTGGTCGTGGTGGTGATGAGCTTTTTGCATAG 909 0.451 MLQTLGFVSLRFVNRSWFRSLSVRAFSSDYGDQSRGGLPRFYSETLPPSKGNVVRVQGDEFWHMTKVLRLNTNDRVQLFNGKGGLVEGCIQNIDRTGLDFVALTDLKLIPPQNTQLHVFSGFGTLKGGRADWLVEKCTELGANSVTPLLTEHSPSISESRVDRLERVILAASKQCQRLHEMILKPPIEIDDLLHLVAQSKLSLVGTANATPVLSALSSLEKETSGFIIIGPEGDFTEKEVSTLMEAGATAVSLGPHRLRVETATIALLSTVMLCRSGAGGNRNSGGRGGNSSGGRGGDELFA* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03034 302 NCBIfam RsmE family RNA methyltransferase 52 273 IPR006700 GO:0006364|GO:0008168
Rops6g03034 302 MobiDBLite consensus disorder prediction 279 302 - -
Rops6g03034 302 Pfam RNA methyltransferase domain 115 271 IPR046886 -
Rops6g03034 302 SUPERFAMILY alpha/beta knot 115 274 IPR029028 -
Rops6g03034 302 FunFam uncharacterized protein LOC106771328 isoform X2 37 281 - -
Rops6g03034 302 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 37 274 IPR006700 GO:0006364|GO:0008168
Rops6g03034 302 CDD RsmE-like 116 269 IPR046886 -
Rops6g03034 302 Pfam RNA methyltransferase PUA domain 57 101 IPR046887 -
Rops6g03034 302 SUPERFAMILY PUA domain-like 40 100 IPR015947 -
Rops6g03034 302 Gene3D - 37 282 IPR029026 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03034 K09761 - gmx:100777253 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03034 6 53390953 53395567 Rops6g03034 6 53390953 53395567 ECH