Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03015 ATGAACAACTTCCACACAACACTCATCTTCTTCATTGGGTTTGTTTCCTCGAGTTTATTTCAAGATTCAGTTGCATCTATTGTTTCAACAGGAGACTTCAATAAGGACTTCTTTGTGATATGGTCTCCGACCCATGTTAACACATCAGCTGATGGACACACAAGAAGCTTGAAACTGGATCAAGAGTCTGGGGCTGGTTTTGCTTCAAACCAGATGTTTTTATTTGGACAAATTGACATGCAAATAAAACTAGTACCAGGTCATTCTGCAGGCACAGTCCTGGCCTATTATCTGACCTCTGATCAACCAAATCGAGATGAGATAGACTTTGAGTTTCTGGGCAATGTTTCTGGGCAGCCATATATTCTTCAAACAAATATTTTTGCAGATGGGACTGACAATAGAGAGGAGAGGATTTATCTTTGGTTTGATCCAACAAAGGACTTTCATACTTACTCTGTGTTATGGAATCTGCACCAGATTGTGTTAATGGTGGATATGATTCCTATAAGAGTGTACAGAAACCATGCAGATAAGGGAGTACCATTTCCTAGATGGCAACCAATGAGTCTGAAAATGACCCTTTGGAATGGTGATAGCTGGGCAACAAGAGGTGGCCAAGATAAGATTGACTGGACTAAAGGTCCCTTCATAGCTTCATCCAGAAATTACAAGATTGATGCTTGTGTGTGGAAAGGGAACCCAAGGTTTTGCAGAGCAGCTAGCCCTTCCAATTGGTGGAACCAATACAATTTCAGCTCACTGACTTCTACACAGAGAAGGTGGTTCAAATGGGCCAGGAAATACCACATGATTTATGACTATTGCCAAGATAATGAGAGGTTCCAAAACAATCTCCCAAGGGAATGTTCTCTTCCCAAGTATTGA 888 0.411 MNNFHTTLIFFIGFVSSSLFQDSVASIVSTGDFNKDFFVIWSPTHVNTSADGHTRSLKLDQESGAGFASNQMFLFGQIDMQIKLVPGHSAGTVLAYYLTSDQPNRDEIDFEFLGNVSGQPYILQTNIFADGTDNREERIYLWFDPTKDFHTYSVLWNLHQIVLMVDMIPIRVYRNHADKGVPFPRWQPMSLKMTLWNGDSWATRGGQDKIDWTKGPFIASSRNYKIDACVWKGNPRFCRAASPSNWWNQYNFSSLTSTQRRWFKWARKYHMIYDYCQDNERFQNNLPRECSLPKY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03015 295 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops6g03015 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 290 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops6g03015 295 Gene3D - 21 294 - -
Rops6g03015 295 Pfam Glycosyl hydrolases family 16 34 214 IPR000757 GO:0004553|GO:0005975
Rops6g03015 295 PIRSF EndGlu_transf 2 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops6g03015 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 107 117 IPR008263 GO:0004553|GO:0005975
Rops6g03015 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 31 290 IPR044791 GO:0004553
Rops6g03015 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 221 IPR000757 GO:0004553|GO:0005975
Rops6g03015 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 293 IPR013320 -
Rops6g03015 295 FunFam Xyloglucan endotransglucosylase/hydrolase 20 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03015 Rops-Chr6 53175397 53176886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03015 57 295 Glycoside Hydrolase AT2G14620 70.711 3.36e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03015 K08235 - gmx:100783152 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03015 6 53175397 53176886 Rops6g03015 6 53175397 53176886 ECH