Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02766 ATGGGAAAGCAAAAGCAACAAGTGATTTCCCGCTTCTTCGCACCCAAACCCAAAACTTCTTCATCACCCACCGATTCACCTTCTCCTTCTTCTCCTCGTCGGAACCCTCCCACTCCCAAAATCTCAGCCACCGTCACTTTCTCTCCATCCAAACGCCGCCTAACTTCCCAGTTAACATCCCCTCACAAGCCATCCAAACACCCCAAGCTCTCTCCTCACACCCACAACCCTGTGCCCGATCCCTCCCTCCACCAACGCTTCCTACAGAAGCTTCTAGAACCTTCTACACACCCTTCGGCTCCCGACCCACCACCTCATCCATCTTCCGAACCCTTAAAGTACACTCCTTTAGAGCAACAAGTGGTAGAACTCAAAAGGAAATACCCTGATGTTCTTTTGATGGTTGAAGTTGGTTACAAGTATCGGTTTTTCGGCCAAGATGCTGAGAATGCTGCTAGAGTTTTGGGTATATATGCACATATGGATCATAATTTTTTAACTGCTAGCATACCAACTTTTCGATTAAATGTCCACGTGAGGAGGCTTGTGAGTGCAGGGTACAAAGTTGGTGTGGTTAAGCAGACCGAGACTGCAGCCATTAAGGCTCATGGTTCAAACCGGTCCGGCCCGTTTTGTCGCGGGTTGTCGGCATTGTACACCAAGGCTACGTTGGAGGCAGCTCAGGATTTGGGGGGAGAGGAAGAGGGGTGTGGGCCCGAGAGTAATTACTTGCTGTGTGTAGTGGAGAAGAACATTTTGGGAGAGAAATCAAATATTGGGGTGGAAAGTGGTTTTGATGTGAGGATTGGGTTTGTTGCTGTGGAAATATCAACTGGTGATGTTGTTTTTGCCGAGTTTAATGACAATTTTTTAAGGAGTGCACTTGAAGCTGTTGTTGTGAGCTTGTCTCCGGCAGAATTGCTTCTTGGGGACCCTCTTTCCAAACAAACGGAGAAGTTATTACTGGCTTTTGCTGGACCTGCCTCAAATGTTCGTGTGGAGCGTGCCTCACGAGATTGCTTCACTGATGGAGGTGCTCTTGCCGAAGTTATGACCTCATATGAGAACATGCACGTAGATGGTCCATCAGATTCAATGCAAAGCAATGATTTGACTGAGCACAGGAGTCAGCAGTTGGTAGTCAAGGAGGTGATGAACATGCCAGATTTGGCTGTCCAAGCCTTGGCCTTAGCTATTCGCCATTTGAAGGAATTCGGTTTTGAAAGAATTCTGTGTTCAGGTGCTTCTTTAAGGCCCTTCGTAAGCAATACGGAAATGATCCTTTCAGCCAATACACTTCAACAACTGGAGGTTTTACAAAATAACAGTGATGGATCCACAAGTGGTTCCTTGCTGCAAATTATGAATCGCACTCTTACTATATTTGGTTCCCGGCTTCTTAGGAATTGGGTTTCTCATCCGTTGCGTGATCAAACCTTGATTTTTGCTCGTCTTCATGCTGTATCTGAAATTGCAGAGTCCATGGGATCTTGTAATGGCATGAAGAATCTTGGATGTTTTGAGGAAGATCCTGAAGTAGCAATTGTGCAGCCTGAGTTAGCATACATGCTTTCATTGGTTTTGACAGCTCTGGGCCGGGCACCTGATATACAGCGTGGGATTACTAGAATTTTCCATTGCACTGCTACCCCATCTGAGTTTGTTGCCGTTATTCAAGCTATTTTGTCTGCTGGAAAACAGCTTCAGCAACTTAACATAGGAGAGGAGGATAATAATAAATTGTGCTCTAATCTATTAAAGAAGTTAATTTTAACTGCTTCCTCTGCCAGCGTTATTGGTAATGCTGCAAAAATGTTGTCATCTTTAAATAAAGACTCTGCTGATCGAGGAGATCTAACAAATTTGATTGTTGCATCTGAGGGACAATTTCCAGAGGTGATTAGAACTCGGAAGGCTTTTCGGATGGCAGTGGAACAATTAGATTCATTGATTGACTTGTACCGTAAACGGCTTGGAATGCGAAATTTGGAATTCATGAGTGTTTCTGGAGTAACTCATTTGATAGAGTTATCAACTGATGTAAAAGTGCCTTCGAACTGGGTTAAGGTAAATAACACAAAGAAAACAATTCGGTATCACCCTCCTGAGGTAGTTACAGCATTGGACAGGTTATCATTAGCGAAAGAGGAGCTTACTGTAGCCTGCCAAGCTGCATGGAATAGCTTTCTGAGGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTACGTTTGCCCAGTGTTTGTAGATGATTGTGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAGACAATTTTGTCCCAAATGATACAAACTTGCATGCAGACAGAGAGTACGGTCAGATTGTTACTGGACCCAATATGGGAGGGAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCGACACTGCATGTCCTGGATGGGATCTACACCCGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTTGAAGAACTAAGTGAGACTTCACATATACTCCATAGCTGTACAGGAAATTCACTGGTTATCATCGACGAGCTTGGGAGAGGTACAAGTACACATGATGGCATGGCCATTGCTTATGCGACATTGCATTATCTTCTGAAGCAGAAAAAAAGCATGGTTCTCTTTGTCACTCACTATCCAAAGATTGCCAATCTGAGAACTGAATTTCCTGGCTCTGTAGCAGCATATCATGTATCACATCTGACCTCACATGATGATGCAAGTAGAAACTCCAACTTTGATCATGAGGATGTCACTTATCTATACAAGCTCGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTACCATCACATTGCATCAGTCGAGCCATTTTCATGGCTTCCAAATTAGAAGCACTAGTAGAGAGTAGAATTCAGAGTAAATCAGGAAAGGAGCTACTGTTGGATGCACTGGTGATTGATCAGGAGCAAGAACCACATCAGCTTATGGCTCAACCACGTGATTGTCCACATCAAGAATTTGGTAGAGCTTACAAGGAATTCTATTCAAACTTAAAAGCTGCAATACTAGATGATGACCATGCACAAAGCTTTCAGCTTTTGGAGAATGCTAGAAGCATTGCAAAGAAATTAATTGGCTGGTGA 3285 0.4405 MGKQKQQVISRFFAPKPKTSSSPTDSPSPSSPRRNPPTPKISATVTFSPSKRRLTSQLTSPHKPSKHPKLSPHTHNPVPDPSLHQRFLQKLLEPSTHPSAPDPPPHPSSEPLKYTPLEQQVVELKRKYPDVLLMVEVGYKYRFFGQDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNRSGPFCRGLSALYTKATLEAAQDLGGEEEGCGPESNYLLCVVEKNILGEKSNIGVESGFDVRIGFVAVEISTGDVVFAEFNDNFLRSALEAVVVSLSPAELLLGDPLSKQTEKLLLAFAGPASNVRVERASRDCFTDGGALAEVMTSYENMHVDGPSDSMQSNDLTEHRSQQLVVKEVMNMPDLAVQALALAIRHLKEFGFERILCSGASLRPFVSNTEMILSANTLQQLEVLQNNSDGSTSGSLLQIMNRTLTIFGSRLLRNWVSHPLRDQTLIFARLHAVSEIAESMGSCNGMKNLGCFEEDPEVAIVQPELAYMLSLVLTALGRAPDIQRGITRIFHCTATPSEFVAVIQAILSAGKQLQQLNIGEEDNNKLCSNLLKKLILTASSASVIGNAAKMLSSLNKDSADRGDLTNLIVASEGQFPEVIRTRKAFRMAVEQLDSLIDLYRKRLGMRNLEFMSVSGVTHLIELSTDVKVPSNWVKVNNTKKTIRYHPPEVVTALDRLSLAKEELTVACQAAWNSFLRDFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVCPVFVDDCEPVQIQICSGRHPVLETTLQDNFVPNDTNLHADREYGQIVTGPNMGGKSCYVRQVALIAIMAQVGSFVPASSATLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTGNSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKKSMVLFVTHYPKIANLRTEFPGSVAAYHVSHLTSHDDASRNSNFDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIFMASKLEALVESRIQSKSGKELLLDALVIDQEQEPHQLMAQPRDCPHQEFGRAYKEFYSNLKAAILDDDHAQSFQLLENARSIAKKLIGW* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02766 1094 Gene3D - 765 1042 IPR027417 -
Rops6g02766 1094 SMART mutATP5 809 1008 IPR000432 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 MobiDBLite consensus disorder prediction 97 111 - -
Rops6g02766 1094 PIRSF Msh6 106 1071 IPR017261 GO:0006298|GO:0030983
Rops6g02766 1094 PIRSF Msh6 2 97 IPR017261 GO:0006298|GO:0030983
Rops6g02766 1094 Gene3D - 428 757 - -
Rops6g02766 1094 MobiDBLite consensus disorder prediction 94 113 - -
Rops6g02766 1094 SUPERFAMILY DNA repair protein MutS, domain II 239 441 IPR036678 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 Pfam MutS domain V 812 1011 IPR000432 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 MobiDBLite consensus disorder prediction 13 28 - -
Rops6g02766 1094 Gene3D - 607 733 - -
Rops6g02766 1094 MobiDBLite consensus disorder prediction 1 82 - -
Rops6g02766 1094 FunFam DNA mismatch repair protein Msh3 607 733 - -
Rops6g02766 1094 Pfam MutS domain I 115 225 IPR007695 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 Pfam MutS domain III 431 757 IPR007696 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 Gene3D DNA repair protein MutS, domain I 107 232 IPR016151 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 Pfam MutS domain II 242 405 IPR007860 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 SMART DNAend 446 792 IPR007696 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 1011 IPR027417 -
Rops6g02766 1094 FunFam DNA mismatch repair protein 238 423 - -
Rops6g02766 1094 SUPERFAMILY DNA repair protein MutS, domain III 430 762 IPR036187 -
Rops6g02766 1094 SUPERFAMILY DNA repair protein MutS, domain I 106 223 IPR016151 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 118 1031 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Rops6g02766 1094 Gene3D MutS, connector domain 238 425 IPR036678 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 FunFam DNA mismatch repair protein MSH3 765 1038 - -
Rops6g02766 1094 ProSitePatterns DNA mismatch repair proteins mutS family signature. 890 906 IPR000432 GO:0005524|GO:0006298|GO:0030983
Rops6g02766 1094 FunFam DNA mismatch repair protein 105 235 - -
Rops6g02766 1094 MobiDBLite consensus disorder prediction 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02766 Rops-Chr6 49660068 49677014 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02766 K08736 - gmx:100789883 1702.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02766 6 49660068 49677014 Rops6g02766 6 49660068 49677014 ECH