Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02750 ATGAATTTAATAACCCTTTTAGGTCCAAGGATGGTCCACAAATTTTCCCATTTGTTGATTATTTCTCGGAGATTATGTAACCATTCGTTTAATGGTGATGGGTTTGAATGTGTTGAGGAGCCTTTGAAAAAATTAGGTTCAGATTATGATTCCAATGTGGATGAAAGGCTCCATTTGAATGAGGATTGGAGTTGTAACCAAAAGTTGTTTTCACTTAGAAAAGGGTTCTTAGAAACTGTCAAGTTAGATGCTAAGAGGGTTCTTGAGGTTCTTAGGCAAGATGGTCCTGGTCTTGATGCCAGGTTGGTTTTAGATGAGTTGCAGATAAAGCCATCAGGGCTTCTTGTGAGAGAGGTTCTCTTTGGAATTTTGAAGAGCATAAATTGTGAGAATAAGACCAGGTGTGCGAAGCTTGCCTATAAGTTTTTCATGTGGTGTAGTCAGCAGGAGGCTTACCGGCACACTGCGAATGCATATCACTTGATTATGAACATATATGCTGAGTGCGAGGAGTTTAAGGCGATGTGGAGGTTGGTTGATGAGATGATGGAGAAAGGGATTCCAGCTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTGGTGAGGCTGGTTTGGCTAAGAAATTGGTGGAGAGGTTTATAAAATCGAAGACGTTTAACTATAGGCCTTTTAAGCACTCTTACAATGCAATTCTGCATGGTCTTCTCGTTTTAAACCAGTATAAGTTGATTGAGTGGGTTTATCAACAGATGTTGCTTGAGGGGTTTTCCTCGGATATTTTAACTTATAATATTGTCATGTATGCCAAGTACAGACTTGGGAAGTTGGATCAGTTTCACAGACTGCTTGATGAGATGGGTAAAAATGGATTTTCTCCAGATTTTCATACCTACAACATTCTTCTTCACGTTCTTGGTAAAGGGGACAAACCACTTGCAGCTCTTAATCTTTTAAATCACATGAGAGAAACAGGTATAGAGCCAACTGTGCTTCATTTCACCACATTGATAGATGGACTCAGTAGAGCTGGGAATCTGGATGCTTGCAAATATTTTTTTGATGAAATGATAAAGAACGGGTGCTTGCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGTGAGCTTGAGAAAGCACAGGAAATGTTTCATGAGATGATTTATAGAGAACAAGTCCCAAATGTTTTTACATACAATTCCATGATTCGGGGTTTATGTATGGCAGGGAAGTTTGATGAAGCATGCTCAATGTTCAAGGAAATGGAAACCAAAGGTTGTAGTCCAAACTCTGTTGTCTATATTACGTTAGTGAGTAGTTTGCGGAATGCTGGAAAGGTTACTGATGCTCATGAAGTGATAAGACACATGATGGAGAAGGGGAAGTATGCCCACTTACTTTCAAGGTTCAAAGGGTATAAGATATAG 1443 0.395 MNLITLLGPRMVHKFSHLLIISRRLCNHSFNGDGFECVEEPLKKLGSDYDSNVDERLHLNEDWSCNQKLFSLRKGFLETVKLDAKRVLEVLRQDGPGLDARLVLDELQIKPSGLLVREVLFGILKSINCENKTRCAKLAYKFFMWCSQQEAYRHTANAYHLIMNIYAECEEFKAMWRLVDEMMEKGIPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNYRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLEGFSSDILTYNIVMYAKYRLGKLDQFHRLLDEMGKNGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMRETGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCLPDVVAYTVMITGYVVAGELEKAQEMFHEMIYREQVPNVFTYNSMIRGLCMAGKFDEACSMFKEMETKGCSPNSVVYITLVSSLRNAGKVTDAHEVIRHMMEKGKYAHLLSRFKGYKI* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02750 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 290 467 - -
Rops6g02750 480 Pfam PPR repeat 228 257 IPR002885 -
Rops6g02750 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Rops6g02750 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Rops6g02750 480 Gene3D Tetratricopeptide repeat domain 322 395 IPR011990 GO:0005515
Rops6g02750 480 Gene3D Tetratricopeptide repeat domain 243 321 IPR011990 GO:0005515
Rops6g02750 480 Gene3D Tetratricopeptide repeat domain 396 476 IPR011990 GO:0005515
Rops6g02750 480 Gene3D Tetratricopeptide repeat domain 112 237 IPR011990 GO:0005515
Rops6g02750 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Rops6g02750 480 Pfam PPR repeat family 157 201 IPR002885 -
Rops6g02750 480 Pfam PPR repeat family 399 446 IPR002885 -
Rops6g02750 480 Pfam PPR repeat family 260 306 IPR002885 -
Rops6g02750 480 Pfam PPR repeat family 329 376 IPR002885 -
Rops6g02750 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Rops6g02750 480 NCBIfam pentatricopeptide repeat 367 393 IPR002885 -
Rops6g02750 480 NCBIfam pentatricopeptide repeat 437 466 IPR002885 -
Rops6g02750 480 NCBIfam pentatricopeptide repeat 263 295 IPR002885 -
Rops6g02750 480 NCBIfam pentatricopeptide repeat 334 366 IPR002885 -
Rops6g02750 480 NCBIfam pentatricopeptide repeat 402 436 IPR002885 -
Rops6g02750 480 NCBIfam pentatricopeptide repeat 297 331 IPR002885 -
Rops6g02750 480 NCBIfam pentatricopeptide repeat 158 189 IPR002885 -
Rops6g02750 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Rops6g02750 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Rops6g02750 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02750 Rops-Chr6 49476368 49491342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02750 228 473 Glycosyltransferase AT1G05670 31.301 3.78e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02750 - - gmx:100792512 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02750 6 49476368 49491342 Rops6g02750 6 49476368 49491342 ECH