Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02730 ATGGTTTCACAGTACGGCATCAAGTTCGCCGTTCATCTCATCACCAGTCACTTCGGCAATCTCGTCGCTAAAGTATGCGAAAATCTACTTACAAATGGGCCTCTCACTTTGGAACAATTGATTCGCTTCACGGAACTCACCAAGGAGCAAGTCAAGAACTCCCTACTTGTCTTAGTTCAACACAATTGCGCCCAAGCATTTGTTTATGAAGGTGGTGATGGAGATGGAGTGAGAGTCAGAACACAGTACCTGGCATTATTTGATAACATACTTCATCGATTGAGGTTTCCCAAATTCATGGAGATTGTGTCACGGGACCTTGATGATGAATGTGTCGAGCTTCTTGATGGATTGCTTCGTAATGGCAGGCTTACCTTGAAACAAATGGTTGACAGAGCTAGTCAAGGAAAAGAAAATGCAGTGGCTACAGATGTTGTACGAGAGACCCTCTGTAGACTTTTGACAGCTCGATATGTTGAGCGCTGTCCTGCCCCTGAGTTGGTTATTTCCACACTAGTTAAAGAAGAAACTACAACTAGGAAGCGGGGTGCTAAGTCTGCCAAGACATTCGAAGCACCAGAGACCATAGAACAACGTGTTATGGAAGCAGCAGTGCCTGGGGAGGCAATCAGATTTTCACTCACTGCAGATACAGGAAATACCGACAGAGACCCAAATTCAGATGATTCCCAAATGATAAGTGTTGGAGATAATGTTGGTAAGACTATTGTCATCTCATCAAAAGAGGAGCTAACTCTTTGGCGTGCAAATTTTGAGGAATTTACACGTTGTCTAAGGAATAAGGTATTAATTGAGAATGTAAGAACACGAATGGATGATGGAACTGCCACTGTCCTTGGTGCAATATTGGAGGCAACAAGAAGTGTAGAGAAAAAAGTGAAAATAGAAAAATCAGCTCCCTTATCGCTGGATACAATTTTCACAGAGGTGATGAAGACTGAAAATGGTCGTACTATGACCATAGATCGTGTTAAAGCTTCTCTTGTTCAGCTGGGTTCAAATTCACAGAAGATGTTAGACGATCTATATATTATTGATTTGAAGCGCATTATTCAATGGGCTCGAAATGAAGAGGTTGAGTCAATTGTGTTAAAAAGGTATGGAAGGGATGCTTACAGAATGTTCAGGCAACTGTCAAGGGATAATCAGTTTTCCCCGACAGATAAGATAGCAGAGTCTACTCTTGTCGAGAAAAAGGAAGCTCCAAAGTTACTGTACAAGTTATGGAAGGATAACTACTTGCATATGGAGAGATTACCTGTGACGGGATCCAAGCAATCACAGATTTTGATGTGGAAAGTTAATGAGCCTCTGATTTGGGAATATGTGCTGGACGAGATGTACCATGCTGCCTTAAATTTGAGCCTAAGAATGGCTTTTGAGATGGAAAAGGATGAAGAGCTTTTAAATGTTCCTAAAGACAAGCTTAGGGAGCCAGGGCCACTACAGAAGAAATACAAACGGCTAGTGAATGTGCGGTTACTGCTGGGATCATCATTGATGAAACTCGACGATGCTTTGATGCTTTTCCATGACTTCTGA 1563 0.4203 MVSQYGIKFAVHLITSHFGNLVAKVCENLLTNGPLTLEQLIRFTELTKEQVKNSLLVLVQHNCAQAFVYEGGDGDGVRVRTQYLALFDNILHRLRFPKFMEIVSRDLDDECVELLDGLLRNGRLTLKQMVDRASQGKENAVATDVVRETLCRLLTARYVERCPAPELVISTLVKEETTTRKRGAKSAKTFEAPETIEQRVMEAAVPGEAIRFSLTADTGNTDRDPNSDDSQMISVGDNVGKTIVISSKEELTLWRANFEEFTRCLRNKVLIENVRTRMDDGTATVLGAILEATRSVEKKVKIEKSAPLSLDTIFTEVMKTENGRTMTIDRVKASLVQLGSNSQKMLDDLYIIDLKRIIQWARNEEVESIVLKRYGRDAYRMFRQLSRDNQFSPTDKIAESTLVEKKEAPKLLYKLWKDNYLHMERLPVTGSKQSQILMWKVNEPLIWEYVLDEMYHAALNLSLRMAFEMEKDEELLNVPKDKLREPGPLQKKYKRLVNVRLLLGSSLMKLDDALMLFHDF* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02730 520 Gene3D - 257 349 IPR036388 -
Rops6g02730 520 FunFam DNA-directed RNA polymerase III subunit rpc3 87 170 - -
Rops6g02730 520 Gene3D - 2 78 IPR036388 -
Rops6g02730 520 Pfam RNA polymerase III subunit RPC82 149 337 IPR008806 GO:0003677|GO:0006351
Rops6g02730 520 FunFam RNA polymerase III subunit, putative 355 442 - -
Rops6g02730 520 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 1 520 IPR039748 GO:0003697|GO:0005666
Rops6g02730 520 FunFam DNA-directed RNA polymerase III subunit RPC3 2 85 - -
Rops6g02730 520 Gene3D - 354 442 IPR036388 -
Rops6g02730 520 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 68 IPR013197 -
Rops6g02730 520 Gene3D - 87 170 IPR036388 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02730 K03023 - gmx:100784750 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02730 6 49070827 49078807 Rops6g02730 6 49070827 49078807 ECH