Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02654 ATGGAGAAGATGCATTACGCAGAGGAGTTGGTGAGGGAGTTTCTTGTGTTCCGAGGATTCACGAATACTCTCGAAGCTTACGAGACCGAATTGCGAACCGATATCGGTAAAGGATTTCAAGTTGACAAGATTCTTGACCTAATCTTCTCCGTTTATGTTCCAAAGTTTCAGGCTGATAAGTTAGTTGCGCTTCTCGGTTTCTTCAAACACTATCTCTCTTCCGAAACGACACTCGTTTCGACCATGTCTAAATTGGAGGTTTCTCTTCTACGCTACTACGTCGTTCACGCCTTGCAATCCAATCGAAGGGACAAAGTTGTTGAGTTTTTCTCACTCAATGGTGCTGAATTGTTGCAAAGTTCTCAGGATTGGGCTCAATGGTTTGCGATTCCTTATATCAAGAATCCACAGTTGGATCCCGAATTTCGAATCTTTTTCTCCAAGGAGTGCATTCACAATTTCATCAAGTCTTTTCTGAAATTATCCTTAATAAAACCACGTTTACCTGCTCTACTGAAGATCAGTTCAGAGATGAATGCTACTAACCTACTCAAAAGAGATATCACACATCTAAATCTTAAATTGTCACAACTTCAGGCTTTACTCAATGAGAAAGAGGCTCAATTATGCCAGTTCAGAAGTATGGAAGGAAGTATTAGTTCATCAAGCAATTCACGTGAAGAAAGTACTCATCTGTCAAAAGATTCTCCAGATGCTTTTTCAACTGTTTTTCCAAGAGCAGTTCAAACAGAGATTAGCCAAGATTCAGTTGTGGGTGGATCTGGAAATATTCAGTCTCAGTCTATCAGCTCCAAGTCTGGTGATGATTCAACTTTATTATTGAATGACCATCTGGGAAATGGCAGACCTGGCAATACCACTCCTAAAGAAAATGACGCGGAAGTTCATGGAGAAGAAGATTTTCCTGAGGTCAAAGTAGAGCACCAGGAGACATTTTTGGGGCACACCAGTCCAATCAGCCGGTGCCGCTTCTCTGCATCTGGAAACAATATTGCTAGCGCTTCTCTTGATGGAACTGTCAGGATATGGACATATGATGCATCAACTCCAGAGTCTAGAAATGCAACCATATATTGTGGGACTGAAATTTTGTCACTTGACTGGGAATGTAAATCAGACCGCTTGCTTCTAATAGGTACATCTGATGGGTGTGTTAAGGCATGGAATGTGGACGCAAAGAGAGTTGTCTGTGACCTCAACACAACTGAAGCATTTCCAAGTGTATTGGACATAAAGTGCAGTCCTGTTGAACCTATTTTCGTGTCTGCAGCAGCATCTGGAGGGGCTGGTTCCAACTATTTTGACAACCTGGGTTTCGCTTCACTATCTGTGTGGAACATGAAGACATGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCGCCAGCAATTACTTCTCTATGCTTCAATCACAATGGGAAGATTTTAGCAGCTTCTGCTGTTGATGGAATGATTCACATGTTTGACATGTCAGCTGGTCTACAAATCACTGGTTGGCCTGCACATGATTCTTCTATCAGTTCTATTCTTTTTGGACCAGATGAGACTAGCATTTTTAGCCTGGGCTCTGATGGGAAGATTTTTGAGTGGAGTTTGCAAAATCAAGGTCAAATCTTGTGGTCAAGAGACTGTAGTAGGTTCTGTTACCCCCTCAACGGTTCAAAATATTGCAGACATGAGATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCAGTTAGAGCACCCATATATCAGGTTCAGGGTCGTTTGAGTGGTTGGAGAACACTTCCTCATGGTGCTCCTATTACTGCTGTAGATTGGCATCCGACCTTGCCCATTTTCTTGACTGGATCAGCTGATAACTCCGTCCGAGTAACATCTTTATCATAG 1908 0.4245 MEKMHYAEELVREFLVFRGFTNTLEAYETELRTDIGKGFQVDKILDLIFSVYVPKFQADKLVALLGFFKHYLSSETTLVSTMSKLEVSLLRYYVVHALQSNRRDKVVEFFSLNGAELLQSSQDWAQWFAIPYIKNPQLDPEFRIFFSKECIHNFIKSFLKLSLIKPRLPALLKISSEMNATNLLKRDITHLNLKLSQLQALLNEKEAQLCQFRSMEGSISSSSNSREESTHLSKDSPDAFSTVFPRAVQTEISQDSVVGGSGNIQSQSISSKSGDDSTLLLNDHLGNGRPGNTTPKENDAEVHGEEDFPEVKVEHQETFLGHTSPISRCRFSASGNNIASASLDGTVRIWTYDASTPESRNATIYCGTEILSLDWECKSDRLLLIGTSDGCVKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGAGSNYFDNLGFASLSVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDGKIFEWSLQNQGQILWSRDCSRFCYPLNGSKYCRHEMALDANGRRLLVTSSSVRAPIYQVQGRLSGWRTLPHGAPITAVDWHPTLPIFLTGSADNSVRVTSLS* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02654 635 SMART WD40_4 500 539 IPR001680 GO:0005515
Rops6g02654 635 SMART WD40_4 456 497 IPR001680 GO:0005515
Rops6g02654 635 SMART WD40_4 357 396 IPR001680 GO:0005515
Rops6g02654 635 SMART WD40_4 312 351 IPR001680 GO:0005515
Rops6g02654 635 SMART WD40_4 595 633 IPR001680 GO:0005515
Rops6g02654 635 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 601 635 - -
Rops6g02654 635 Gene3D - 558 635 IPR015943 GO:0005515
Rops6g02654 635 Pfam WD domain, G-beta repeat 316 350 IPR001680 GO:0005515
Rops6g02654 635 Pfam WD domain, G-beta repeat 604 631 IPR001680 GO:0005515
Rops6g02654 635 MobiDBLite consensus disorder prediction 255 280 - -
Rops6g02654 635 SUPERFAMILY WD40 repeat-like 305 631 IPR036322 GO:0005515
Rops6g02654 635 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Rops6g02654 635 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 635 IPR001680 GO:0005515
Rops6g02654 635 Pfam Anaphase-promoting complex subunit 4 WD40 domain 466 519 IPR024977 -
Rops6g02654 635 Coils Coil 188 208 - -
Rops6g02654 635 PANTHER OS05G0299300 PROTEIN 1 634 - -
Rops6g02654 635 MobiDBLite consensus disorder prediction 218 238 - -
Rops6g02654 635 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 350 - -
Rops6g02654 635 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 542 IPR001680 GO:0005515
Rops6g02654 635 Gene3D - 202 434 IPR015943 GO:0005515
Rops6g02654 635 Gene3D - 435 557 IPR015943 GO:0005515
Rops6g02654 635 MobiDBLite consensus disorder prediction 255 306 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02654 K24760 - gmx:100788591 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02654 6 47793162 47801078 Rops6g02654 6 47793162 47801078 ECH