Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02580 ATGACTGAACCCTCCAAGGTCATTCACGTTCGAAACGTGGGGCACGAAATATCTGAAAATGATTTACTTCAGCTATTTCAGCCTTTTGGAGTCATAACAAAGCTTGTGATGCTGCGGGCAAAAAATCAGGCTCTTCTCCAAATGCAAGATGTTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATGTTCAACCAAGCATAAGGGGGAGGAATGTTTATGTCCAATTTTCCTCACATCAAGAACTAACAACAGTAGATCAAAGTCAAGGACGAGGAGATGAGCCAAATCGAATTCTCTTAGTTACAATACATCACATGCTCTATCCTATGACAGTGGATGTGCTGTATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACAACAGGGTGCTATTACTGCGAGAAGTACACTGCAGGGTCGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGGGACTTCACAAACCCGAATCTCCCCACAGAGCAGAAAGGCAGGTCTTCACAACCTGGATATGGTGATGCAGGAAACATGTATCCTTCTGGAGCCAGGGCAGTTGGATTTCCACAGATGGCGAATGCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGAATAACTGGGACAAATGACAGGTGTACAGTTATTGTCTCAAATCTTAATCCTGAGAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGAATTAAACTTCTCCGAAATAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTGGCAGTACACTTTCTGAAGGGAGCCATGTTGTTTGGGAAGCAATTAGAAGTCAACTTCTCAAAGCATCCTCACATAACCCAAGGTGCTGACACACACGAGTATGTCAATTCAAATCTGAATCGTTTCAATCGAAATGCTGCTAAAAACTACCGGTATTGCTGCTCCCCAACAAAGATGATCCATTTGTCCACACTCCCACAAGACATCACTGAGGAGGAGATTGTGAGCCTTGTAGAGGAGCATGGAACCATTGTCAACAGCAAAGTGTTTGAGATGAATGGGAAAAAACAGGCTCTGGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTTGTGTGTAAGCATGCCACCTCACTTTCTGGCTCAGTAATCAGGATCTCCTATTCCCAGTTACAGAATATATGA 1323 0.4316 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQGAITARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAGNMYPSGARAVGFPQMANAAAIAAAFGGGLPPGITGTNDRCTVIVSNLNPERIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKQLEVNFSKHPHITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLVEEHGTIVNSKVFEMNGKKQALVQFETEEQATEALVCKHATSLSGSVIRISYSQLQNI* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02580 440 MobiDBLite consensus disorder prediction 185 213 - -
Rops6g02580 440 Pfam RRM-like domain 95 174 IPR021790 -
Rops6g02580 440 Gene3D - 250 343 IPR012677 -
Rops6g02580 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 363 437 IPR000504 GO:0003723
Rops6g02580 440 SUPERFAMILY RNA-binding domain, RBD 251 436 IPR035979 GO:0003676
Rops6g02580 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 338 - -
Rops6g02580 440 Gene3D - 1 96 IPR012677 -
Rops6g02580 440 CDD RRM1_PTBPH3 6 80 IPR034795 -
Rops6g02580 440 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Rops6g02580 440 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Rops6g02580 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Rops6g02580 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 431 IPR000504 GO:0003723
Rops6g02580 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Rops6g02580 440 MobiDBLite consensus disorder prediction 185 207 - -
Rops6g02580 440 CDD RRM4_PTBPH3 356 434 - -
Rops6g02580 440 Gene3D - 97 201 IPR012677 -
Rops6g02580 440 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 418 - -
Rops6g02580 440 CDD RRM3_PTBPH3 252 327 IPR034797 -
Rops6g02580 440 SMART rrm1_1 7 76 IPR000504 GO:0003723
Rops6g02580 440 SMART rrm1_1 254 323 IPR000504 GO:0003723
Rops6g02580 440 SMART rrm1_1 101 170 IPR000504 GO:0003723
Rops6g02580 440 SMART rrm1_1 364 433 IPR000504 GO:0003723
Rops6g02580 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 327 IPR000504 GO:0003723
Rops6g02580 440 Gene3D - 344 439 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02580 Rops-Chr6 46463810 46469896 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02580 K14948 - gmx:100819672 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01108 5 22747406 22756485 Rops6g02580 6 46463810 46469896 PCT