Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02502 ATGGGTGACAAAAGAAAGAAGAAGCACCGCGACACTCCCTCTTCTTCATCCTCTCCGTCCTCCTATTCCGACTCTGACTCCGACCACTCTTCCAGGCGGCGACGGCGGCGGAGGGAAAAGGAGCGGCGCAGAAAGAGCGAGCGGGAAAGGGAGAGCAGCAGGAGAAGAGAAAAGAGGAAGAAGAAGAGAGACAGAGAGAAGAAAAGGACCAAGAGGGTCCATGATTCTGATGGGTCCCACTCTTCTCAGGAGGAAGAGGAACACCAACTCAGGGTTCAGCCTCAGTCAGTCGTGCGTGAAATGATGATCGAGTTCCCCAATGTTGGTAACGATTTGAAGCAGCTCTTGCAAATGATTGACGATGGACAAGCTGTTGACATAAAAGGTATATCAGAAAGATCTCTGATGAAGCATCTGAAGAAGCTGTTCCTTTCGTTAAATCTTAAGGAAAATGGAGACAGAGTTTTCTTGCTACCTTCTAAAGCTTGCCCTACTTTGGATGTTCTTGGCCCTCTTATTCACTCTTATATGCATCCCATGAATGAGCAAGCTGATCCTTCGGCAGCAGCGCCTGAAACATCTTCAGTTCCAACAGATATGGGGAGTGAACAGATGGTAGATGACCAGACAACAGCAACTCCAGAGGATCATTCTGTTGGTCCTAGAAGAAGGATGATTGGCCCTGCAATGCCATCAGCTGAATTACTTGCTGCCGCCGCCAAATTAACAGAGGCACAGACTGAGCTCAGAGAAGCTGAATTGGACGACGATACTGAACTATTTATAGGACCTCCACCACCTGCTATGGTTTCTGAAGCAGAATCAGCTAATGAAGCAGAACGCTTTGAAGAGGTCACCAGGATCATGGAAGTTGAGGCTGACAGCCCATATGATGTTCTAGGAGTTAACCATAATATGTCCAGTGATAACATAAAGAAAAGGTACTGGAAGATGTCACTATTGGTTCATCCAGATAAATGCTCTCATCCACAAGCCCACCAAGCATTTATTAAGTTAAATAAAGCTTTCAAAGAATTACAAGATCCAGAAAAGCGGAAAGCAATGGATGAAAAAATCAAACTCAAGCAAGAACAGGAGGAATTCAAGGCTGAACTTAAAGTCATGCGTGAGGCTGCACTGTGGAGAAGATCCCAAGGAATATCCATGGAGGGTGATGATGAGCTTCTGGCACAGACAGAGGTTAAAGTGGAACCAAAAAGAGATGAATGGATGACGACACTGCCTCCAGAGAGGAAACCTGGTATGACTATGCAATCAACCAAGTTTAGCCGGGGCTCGAAGGAAGGTAGAGGTGATACTAGTGTTTGGACAGATACCCCTTCTGACAGAGCCCAGAAAGCCAAAATGAATTATTTGGAAGCATACAATGAGGCTACTGCACTAGCCTCAAATGAAGGGGAAAAGAAAAGGGCCAGTGCTGATGCAGATTTGGTGGACAAATACAATAAAGCAAAACGATCAAAAACATTGTTGCAGAAGCATGAAGAAGAGGTTGCTAGAAAATCCAAGAAAAAGTCCAAGCAACAGCCAGAGAAGAAAGAGTGGGTGGGTCAACATCCATGGAAGCCATGGGACCGTGAAAAGGATCTGACAGCTGGGAGGAAAAGTGTAAAATTGGATTCAGAAAGCATGTCTCAGGGCTTATCTTCAAGGTTTTCTTCTGGAAACTTTCAGAGGAACTTCCTTTGA 1710 0.4544 MGDKRKKKHRDTPSSSSSPSSYSDSDSDHSSRRRRRRREKERRRKSERERESSRRREKRKKKRDREKKRTKRVHDSDGSHSSQEEEEHQLRVQPQSVVREMMIEFPNVGNDLKQLLQMIDDGQAVDIKGISERSLMKHLKKLFLSLNLKENGDRVFLLPSKACPTLDVLGPLIHSYMHPMNEQADPSAAAPETSSVPTDMGSEQMVDDQTTATPEDHSVGPRRRMIGPAMPSAELLAAAAKLTEAQTELREAELDDDTELFIGPPPPAMVSEAESANEAERFEEVTRIMEVEADSPYDVLGVNHNMSSDNIKKRYWKMSLLVHPDKCSHPQAHQAFIKLNKAFKELQDPEKRKAMDEKIKLKQEQEEFKAELKVMREAALWRRSQGISMEGDDELLAQTEVKVEPKRDEWMTTLPPERKPGMTMQSTKFSRGSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYNEATALASNEGEKKRASADADLVDKYNKAKRSKTLLQKHEEEVARKSKKKSKQQPEKKEWVGQHPWKPWDREKDLTAGRKSVKLDSESMSQGLSSRFSSGNFQRNFL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02502 569 Coils Coil 491 511 - -
Rops6g02502 569 Gene3D DnaJ domain 278 379 IPR036869 -
Rops6g02502 569 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 8 569 - -
Rops6g02502 569 CDD DnaJ 296 348 IPR001623 -
Rops6g02502 569 MobiDBLite consensus disorder prediction 187 216 - -
Rops6g02502 569 MobiDBLite consensus disorder prediction 545 569 - -
Rops6g02502 569 MobiDBLite consensus disorder prediction 411 447 - -
Rops6g02502 569 Pfam Protein of unknown function (DUF3752) 415 560 IPR022226 -
Rops6g02502 569 MobiDBLite consensus disorder prediction 1 93 - -
Rops6g02502 569 Coils Coil 36 56 - -
Rops6g02502 569 MobiDBLite consensus disorder prediction 419 447 - -
Rops6g02502 569 Coils Coil 235 255 - -
Rops6g02502 569 SMART dnaj_3 294 351 IPR001623 -
Rops6g02502 569 MobiDBLite consensus disorder prediction 70 93 - -
Rops6g02502 569 MobiDBLite consensus disorder prediction 55 69 - -
Rops6g02502 569 MobiDBLite consensus disorder prediction 469 569 - -
Rops6g02502 569 ProSiteProfiles dnaJ domain profile. 295 359 IPR001623 -
Rops6g02502 569 Pfam DnaJ domain 296 356 IPR001623 -
Rops6g02502 569 SUPERFAMILY Chaperone J-domain 266 353 IPR036869 -
Rops6g02502 569 Coils Coil 351 378 - -
Rops6g02502 569 PRINTS DnaJ domain signature 331 351 IPR001623 -
Rops6g02502 569 PRINTS DnaJ domain signature 297 315 IPR001623 -
Rops6g02502 569 PRINTS DnaJ domain signature 315 330 IPR001623 -
Rops6g02502 569 MobiDBLite consensus disorder prediction 182 222 - -
Rops6g02502 569 MobiDBLite consensus disorder prediction 470 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02502 Rops-Chr6 45400810 45410518 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02502 - - gmx:100788598 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02502 6 45400810 45410518 Rops6g02502 6 45400810 45410518 ECH